Материалы:NC 004631

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_004631            4791961 bp    DNA     circular BCT 14-DEC-2006
   DEFINITION  Salmonella enterica subsp. enterica serovar Typhi Ty2, complete
               genome.
   ACCESSION   NC_004631
   VERSION     NC_004631.1  GI:29140543
   KEYWORDS    .
   SOURCE      Salmonella enterica subsp. enterica serovar Typhi Ty2
     ORGANISM  Salmonella enterica subsp. enterica serovar Typhi Ty2
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica
               serovar Typhi.
   REFERENCE   1  (bases 1 to 4791961)
     AUTHORS   Deng,W., Liou,S.R., Plunkett III,G., Mayhew,G.F., Rose,D.J.,
               Burland,V., Kodoyianni,V., Schwartz,D.C. and Blattner,F.R.
     TITLE     Comparative Genomics of Salmonella enterica Serovar Typhi Strains
               Ty2 and CT18
     JOURNAL   J. Bacteriol. 185 (7), 2330-2337 (2003)
      PUBMED   12644504
   REFERENCE   2  (bases 1 to 4791961)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (10-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4791961)
     AUTHORS   Deng,W., Liou,S.-R., Plunkett,G. III, Mayhew,G.F., Rose,D.J.,
               Burland,V., Kodoyianni,V., Schwartz,D.C. and Blattner,F.R.
     TITLE     Direct Submission
     JOURNAL   Submitted (25-SEP-2002) Laboratory of Genetics, University of
               Wisconsin - Madison, 445 Henry Mall, Madison, WI 53706, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE014613.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
287477	289010	+	1534	29140543	t0252	-	16S ribosomal RNA
289097	289172	+	76	29140543	t0253	-	^{04 Glu tRNA}
289366	292371	+	3006	29140543	t0254	-	23S ribosomal RNA
292472	292591	+	120	29140543	t4650	-	5S ribosomal RNA
511872	511947	-	76	29140543	t0438	-	^{10 Lys tRNA}
511952	512027	-	76	29140543	t0439	-	^{13 Val tRNA}
512069	512144	-	76	29140543	t0440	-	^{13 Val tRNA}
512190	512265	-	76	29140543	t0441	-	^{13 Val tRNA}
514971	515046	+	76	29140543	t0445	-	^{02 Ala tRNA}
515089	515164	+	76	29140543	t0446	-	^{02 Ala tRNA}
543845	543919	-	75	29140543	t0470	-	^{11 Arg tRNA}
680758	681114	-	357	29140543	t4642	-	MicF RNA; post-transcriptional regulator of ompF gene
707497	707573	-	77	29140543	t0625	-	^{03 Pro tRNA}
951127	951202	-	76	29140543	t0861	-	^{07 Asn tRNA}
952960	953035	+	76	29140543	t0863	-	^{07 Asn tRNA}
978952	979027	-	76	29140543	t0873	-	^{07 Asn tRNA}
979575	979650	-	76	29140543	t0876	-	^{07 Asn tRNA}
980637	980726	+	90	29140543	t0878	-	^{08 Ser tRNA}
994136	994216	+	81	29140543	t4641	-	DsrA RNA
1026594	1026669	+	76	29140543	t0932	-	^{01 Gly tRNA}
1026722	1026795	+	74	29140543	t0933	-	^{19 Cys tRNA}
1026807	1026893	+	87	29140543	t0934	-	^{15 Leu tRNA}
1200360	1200436	+	77	29140543	t1121	-	^{11 Arg tRNA}
1212819	1212895	+	77	29140543	t1140	-	^{11 Arg tRNA}
1356053	1356129	-	77	29140543	t1291	-	^{13 Val tRNA}
1356140	1356216	-	77	29140543	t1292	-	^{13 Val tRNA}
1846078	1846165	+	88	29140543	t1786	-	^{08 Ser tRNA}
1895658	1895745	-	88	29140543	t1833	-	^{08 Ser tRNA}
2043010	2043097	+	88	29140543	t1984	-	^{08 Ser tRNA}
2187114	2187189	-	76	29140543	t2123	-	^{10 Lys tRNA}
2187324	2187399	-	76	29140543	t2124	-	^{10 Lys tRNA}
2187542	2187617	-	76	29140543	t2125	-	^{10 Lys tRNA}
2266374	2266450	+	77	29140543	t2196	-	^{16 Met tRNA}
2266459	2266543	+	85	29140543	t2197	-	^{15 Leu tRNA}
2266567	2266641	+	75	29140543	t2198	-	^{05 Gln tRNA}
2266677	2266751	+	75	29140543	t2199	-	^{05 Gln tRNA}
2266767	2266843	+	77	29140543	t2200	-	^{16 Met tRNA}
2266890	2266964	+	75	29140543	t2201	-	^{05 Gln tRNA}
2375510	2375586	-	77	29140543	t2310	-	^{11 Arg tRNA}
2463704	2463841	-	138	29140543	t4640	-	4.5S RNA; component of signal recognition particle
2602939	2603014	-	76	29140543	t2527	-	^{12 Thr tRNA}
2677913	2677989	-	77	29140543	t2600	-	^{06 Asp tRNA}
2687352	2687428	-	77	29140543	t2611	-	^{06 Asp tRNA}
2687481	2687600	-	120	29140543	t4649	-	5S ribosomal RNA
2687701	2690706	-	3006	29140543	t2612	-	23S ribosomal RNA
2690889	2690964	-	76	29140543	t2613	-	^{02 Ala tRNA}
2691076	2691152	-	77	29140543	t2614	-	^{14 Ile tRNA}
2691223	2692757	-	1535	29140543	t2615	-	16S ribosomal RNA
2734381	2734847	+	467	29140543	t4643	-	10Sa tmRNA
2808679	2808755	-	77	29140543	t2719	-	^{11 Arg tRNA}
2808952	2809028	-	77	29140543	t2721	-	^{11 Arg tRNA}
2809091	2809167	-	77	29140543	t2723	-	^{11 Arg tRNA}
2809230	2809307	-	78	29140543	t2725	-	^{11 Arg tRNA}
2809311	2809403	-	93	29140543	t2726	-	^{08 Ser tRNA}
2958127	2958482	-	356	29140543	t4644	-	CsrB RNA
2982496	2982572	+	77	29140543	t2897	-	^{16 Met tRNA}
2982602	2982678	+	77	29140543	t2898	-	^{16 Met tRNA}
3045439	3045512	-	74	29140543	t2955	-	^{01 Gly tRNA}
3070118	3070300	+	183	29140543	t4645	-	6S RNA
3118025	3118100	+	76	29140543	t3029	-	^{17 Phe tRNA}
3221999	3222074	+	76	29140543	t3133	-	^{14 Ile tRNA}
3257454	3257829	-	376	29140543	t4646	-	M1 RNA
3299809	3299885	-	77	29140543	t3207	-	^{16 Met tRNA}
3301770	3301856	-	87	29140543	t3209	-	^{15 Leu tRNA}
3403433	3403552	-	120	29140543	t4656	-	5S ribosomal RNA
3403590	3403665	-	76	29140543	t3306	-	^{12 Thr tRNA}
3403814	3403933	-	120	29140543	t4651	-	5S ribosomal RNA
3404034	3407039	-	3006	29140543	t3307	-	23S ribosomal RNA
3407225	3407300	-	76	29140543	t3308	-	^{02 Ala tRNA}
3407412	3407488	-	77	29140543	t3309	-	^{14 Ile tRNA}
3407559	3409092	-	1534	29140543	t3310	-	16S ribosomal RNA
3465290	3465366	-	77	29140543	t3363	-	^{03 Pro tRNA}
3465409	3465495	-	87	29140543	t3364	-	^{15 Leu tRNA}
3465516	3465591	-	76	29140543	t3365	-	^{09 His tRNA}
3465646	3465722	-	77	29140543	t3366	-	^{11 Arg tRNA}
3538178	3538253	-	76	29140543	t3450	-	^{20 Trp tRNA}
3538262	3538338	-	77	29140543	t3451	-	^{06 Asp tRNA}
3538391	3538510	-	120	29140543	t4652	-	5S ribosomal RNA
3538611	3541616	-	3006	29140543	t3452	-	23S ribosomal RNA
3541810	3541885	-	76	29140543	t3453	-	^{04 Glu tRNA}
3541972	3543505	-	1534	29140543	t3454	-	16S ribosomal RNA
3576381	3576456	-	76	29140543	t3482	-	^{12 Thr tRNA}
3576463	3576537	-	75	29140543	t3483	-	^{01 Gly tRNA}
3576654	3576738	-	85	29140543	t3484	-	^{18 Tyr tRNA}
3576747	3576822	-	76	29140543	t3485	-	^{12 Thr tRNA}
3580445	3580564	-	120	29140543	t4653	-	5S ribosomal RNA
3580665	3583671	-	3007	29140543	t3490	-	23S ribosomal RNA
3583854	3583929	-	76	29140543	t3491	-	^{02 Ala tRNA}
3584041	3584117	-	77	29140543	t3492	-	^{14 Ile tRNA}
3584188	3585721	-	1534	29140543	t3493	-	16S ribosomal RNA
3593822	3594004	+	183	29140543	t4647	-	OxyS RNA
3721814	3721923	-	110	29140543	t4648	-	Spot 42 RNA
3729439	3729558	-	120	29140543	t4654	-	5S ribosomal RNA
3729659	3732664	-	3006	29140543	t3628	-	23S ribosomal RNA
3732858	3732933	-	76	29140543	t3629	-	^{04 Glu tRNA}
3733020	3734553	-	1534	29140543	t3630	-	16S ribosomal RNA
3885953	3886043	-	91	29140543	t3768	-	Sec tRNA
4007384	4007460	+	77	29140543	t3880	-	^{03 Pro tRNA}
4242149	4243682	+	1534	29140543	t4106	-	16S ribosomal RNA
4243769	4243844	+	76	29140543	t4107	-	^{04 Glu tRNA}
4244038	4247043	+	3006	29140543	t4108	-	23S ribosomal RNA
4247144	4247263	+	120	29140543	t4655	-	5S ribosomal RNA
4525975	4526050	-	76	29140543	t4372	-	^{17 Phe tRNA}
4555903	4555978	+	76	29140543	t4404	-	^{01 Gly tRNA}
4556135	4556210	+	76	29140543	t4405	-	^{01 Gly tRNA}
4666494	4666578	+	85	29140543	t4517	-	^{15 Leu tRNA}
4750118	4750204	-	87	29140543	t4596	-	^{15 Leu tRNA}
4750236	4750322	-	87	29140543	t4597	-	^{15 Leu tRNA}
4750350	4750436	-	87	29140543	t4598	-	^{15 Leu tRNA}