Материалы:NC 004741

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_004741            4599354 bp    DNA     circular BCT 14-SEP-2007
   DEFINITION  Shigella flexneri 2a str. 2457T, complete genome.
   ACCESSION   NC_004741
   VERSION     NC_004741.1  GI:30061571
   KEYWORDS    .
   SOURCE      Shigella flexneri 2a str. 2457T
     ORGANISM  Shigella flexneri 2a str. 2457T
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Shigella.
   REFERENCE   1  (bases 1 to 4599354)
     AUTHORS   Wei,J., Goldberg,M.B., Burland,V., Venkatesan,M.M., Deng,W.,
               Fournier,G., Mayhew,G.F., Plunkett,G.III, Rose,D.J., Darling,A.,
               Mau,B., Perna,N.T., Payne,S.M., Runyen-Janecky,L.J., Zhou,S.,
               Schwartz,D.C. and Blattner,F.R.
     TITLE     Complete Genome Sequence and Comparative Genomics of Shigella
               flexneri Serotype 2a Strain 2457T
     JOURNAL   Infect. Immun. 71 (5), 2775-2786 (2003)
      PUBMED   12704152
   REFERENCE   2  (bases 1 to 4599354)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-APR-2003) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4599354)
     AUTHORS   Wei,J., Goldberg,M.B., Burland,V., Venkatesan,M.M., Deng,W.,
               Fournier,G., Mayhew,G.F., Plunkett,G.III, Rose,D.J., Darling,A.,
               Mau,B., Perna,N.T., Payne,S.M., Runyen-Janecky,L.J., Zhou,S.,
               Schwartz,D.C. and Blattner,F.R.
     TITLE     Direct Submission
     JOURNAL   Submitted (13-JUN-2002) Genetics Laboratory, University of
               Wisconsin - Madison, 445 Henry Mall, Madison, WI 53706, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE014073.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
15602	15656	+	55	30061571	S0016	-	antisense RNA
214156	215696	+	1541	30061571	S0194	-	16S ribosomal RNA
215765	215841	+	77	30061571	S0195	-	^{14 Ile tRNA}
215884	215959	+	76	30061571	S0196	-	^{02 Ala tRNA}
216143	219046	+	2904	30061571	S0197	-	23S ribosomal RNA
219141	219259	+	119	30061571	S0198	-	5S ribosomal RNA
219312	219388	+	77	30061571	S0199	-	^{06 Asp tRNA}
228962	229038	+	77	30061571	S0210	-	^{06 Asp tRNA}
313753	313828	+	76	30061571	S0315	-	^{12 Thr tRNA}
412780	412893	+	114	30061571	S0407	-	4.5S RNA
479736	479812	+	77	30061571	S0474	-	^{11 Arg tRNA}
572230	572305	-	76	30061571	S0563	-	^{10 Lys tRNA}
572309	572384	-	76	30061571	S0564	-	^{13 Val tRNA}
572436	572511	-	76	30061571	S0565	-	^{10 Lys tRNA}
572514	572589	-	76	30061571	S0566	-	^{13 Val tRNA}
572725	572800	-	76	30061571	S0567	-	^{10 Lys tRNA}
650819	650895	+	77	30061571	S0631	-	^{16 Met tRNA}
650904	650988	+	85	30061571	S0632	-	^{15 Leu tRNA}
651012	651086	+	75	30061571	S0634	-	^{05 Gln tRNA}
651121	651195	+	75	30061571	S0636	-	^{05 Gln tRNA}
651211	651287	+	77	30061571	S0637	-	^{16 Met tRNA}
651336	651410	+	75	30061571	S0639	-	^{05 Gln tRNA}
651448	651522	+	75	30061571	S0640	-	^{05 Gln tRNA}
709308	709384	+	77	30061571	S0710	-	^{14 Ile tRNA}
709386	709462	+	77	30061571	S0711	-	^{11 Arg tRNA}
709465	709539	+	75	30061571	S0712	-	^{12 Thr tRNA}
709543	709617	+	75	30061571	S0713	-	^{01 Gly tRNA}
718318	718394	+	77	30061571	S0727	-	^{14 Ile tRNA}
718396	718472	+	77	30061571	S0728	-	^{11 Arg tRNA}
718475	718550	+	76	30061571	S0729	-	^{12 Thr tRNA}
718554	718628	+	75	30061571	S0730	-	^{01 Gly tRNA}
872069	872156	-	88	30061571	S0883	-	^{08 Ser tRNA}
1023509	1023596	-	88	30061571	S1039	-	^{08 Ser tRNA}
1076674	1076761	-	88	30061571	S1099	-	^{08 Ser tRNA}
1282470	1282554	-	85	30061571	S1317	-	^{18 Tyr tRNA}
1445087	1446581	+	1495	30061571	S1481	-
1616401	1616477	-	77	30061571	S1662	-	^{11 Arg tRNA}
1616579	1616654	-	76	30061571	S1663	-	^{14 Ile tRNA}
1765714	1765790	+	77	30061571	S1825	-	^{13 Val tRNA}
1765795	1765871	+	77	30061571	S1826	-	^{13 Val tRNA}
1914353	1914427	-	75	30061571	S1982	-	^{01 Gly tRNA}
1914431	1914506	-	76	30061571	S1983	-	^{12 Thr tRNA}
1914509	1914585	-	77	30061571	S1984	-	^{11 Arg tRNA}
1914587	1914662	-	76	30061571	S1985	-	^{14 Ile tRNA}
1964753	1964839	-	87	30061571	S2048	-	^{15 Leu tRNA}
1964852	1964925	-	74	30061571	S2049	-	^{19 Cys tRNA}
1964980	1965055	-	76	30061571	S2050	-	^{01 Gly tRNA}
2001774	2001860	-	87	30061571	S2093	-	antsense RNA silencer of rcsA gene
2036312	2036387	-	76	30061571	S2137	-	^{12 Thr tRNA}
2036468	2036543	-	76	30061571	S2138	-	^{14 Ile tRNA}
2041762	2041851	-	90	30061571	S2147	-	^{08 Ser tRNA}
2042843	2042918	+	76	30061571	S2149	-	^{07 Asn tRNA}
2050720	2050795	-	76	30061571	S2162	-	^{07 Asn tRNA}
2052528	2052603	+	76	30061571	S2164	-	^{07 Asn tRNA}
2054938	2055013	+	76	30061571	S2167	-	^{07 Asn tRNA}
2288868	2288944	+	77	30061571	S2405	-	^{03 Pro tRNA}
2313945	2314036	+	92	30061571	S2430	-	regulatory antisense RNA
2454726	2454800	+	75	30061571	S2561	-	^{11 Arg tRNA}
2497591	2497666	-	76	30061571	S2601	-	^{02 Ala tRNA}
2497706	2497781	-	76	30061571	S2602	-	^{02 Ala tRNA}
2500481	2500556	+	76	30061571	S2606	-	^{13 Val tRNA}
2500601	2500676	+	76	30061571	S2607	-	^{13 Val tRNA}
2500681	2500756	+	76	30061571	S2608	-	^{10 Lys tRNA}
2716555	2716673	-	119	30061571	S2823	-	5S ribosomal RNA
2716768	2719671	-	2904	30061571	S2824	-	23S ribosomal RNA
2719865	2719940	-	76	30061571	S2825	-	^{04 Glu tRNA}
2720026	2721566	-	1541	30061571	S2826	-	16S ribosomal RNA
2748766	2749128	+	363	30061571	S2858	-	10Sa RNA (tmRNA)
2753003	2753078	-	76	30061571	S2864	-	^{14 Ile tRNA}
2786184	2786260	-	77	30061571	S2905	-	^{11 Arg tRNA}
2786325	2786401	-	77	30061571	S2906	-	^{11 Arg tRNA}
2786466	2786542	-	77	30061571	S2907	-	^{11 Arg tRNA}
2786607	2786683	-	77	30061571	S2908	-	^{11 Arg tRNA}
2786687	2786779	-	93	30061571	S2909	-	^{08 Ser tRNA}
2877845	2878213	-	369	30061571	S3000	-	CsrA-binding RNA
2902512	2902588	+	77	30061571	S3023	-	^{16 Met tRNA}
2902622	2902698	+	77	30061571	S3024	-	^{16 Met tRNA}
2951077	2951150	-	74	30061571	S3066	-	^{01 Gly tRNA}
2981986	2982169	+	184	30061571	S3096	-	6S RNA
3044640	3044715	+	76	30061571	S3167	-	^{17 Phe tRNA}
3194737	3194812	+	76	30061571	S3316	-	^{14 Ile tRNA}
3252828	3253204	-	377	30061571	S3375	-	RNA component of RNase P
3301512	3301588	-	77	30061571	S3429	-	^{16 Met tRNA}
3305372	3305458	-	87	30061571	S3432	-	^{15 Leu tRNA}
3396385	3396497	-	113	30061571	S3528	-	5S ribosomal RNA
3396538	3396613	-	76	30061571	S3529	-	^{12 Thr tRNA}
3396626	3396744	-	119	30061571	S3530	-	5S ribosomal RNA
3396839	3399742	-	2904	30061571	S3531	-	23S ribosomal RNA
3399926	3400001	-	76	30061571	S3532	-	^{02 Ala tRNA}
3400044	3400120	-	77	30061571	S3533	-	^{14 Ile tRNA}
3400189	3401730	-	1542	30061571	S3534	-	16S ribosomal RNA
3541100	3541218	-	119	30061571	S3653	-	5S ribosomal RNA
3541313	3544216	-	2904	30061571	S3654	-	23S ribosomal RNA
3544410	3544485	-	76	30061571	S3655	-	^{04 Glu tRNA}
3544571	3546112	-	1542	30061571	S3656	-	16S ribosomal RNA
3577637	3577712	-	76	30061571	S3683	-	^{12 Thr tRNA}
3577719	3577793	-	75	30061571	S3684	-	^{01 Gly tRNA}
3577910	3577994	-	85	30061571	S3685	-	^{18 Tyr tRNA}
3578003	3578078	-	76	30061571	S3686	-	^{12 Thr tRNA}
3581536	3581654	-	119	30061571	S3691	-	5S ribosomal RNA
3581749	3584652	-	2904	30061571	S3692	-	23S ribosomal RNA
3584846	3584921	-	76	30061571	S3693	-	^{04 Glu tRNA}
3585007	3586548	-	1542	30061571	S3694	-	16S ribosomal RNA
3594803	3594911	+	109	30061571	S3702	-	regulatory RNA
3710524	3710632	-	109	30061571	S3812	-	spot 42 RNA
3719726	3719844	-	119	30061571	S3821	-	5S ribosomal RNA
3719939	3722842	-	2904	30061571	S3822	-	23S ribosomal RNA
3723026	3723101	-	76	30061571	S3823	-	^{02 Ala tRNA}
3723144	3723220	-	77	30061571	S3824	-	^{14 Ile tRNA}
3723289	3724830	-	1542	30061571	S3825	-	16S ribosomal RNA
3781918	3781994	-	77	30061571	S3886	-	^{03 Pro tRNA}
3782037	3782123	-	87	30061571	S3887	-	^{15 Leu tRNA}
3782144	3782219	-	76	30061571	S3888	-	^{09 His tRNA}
3782278	3782354	-	77	30061571	S3889	-	^{11 Arg tRNA}
3816778	3816853	-	76	30061571	S3923	-	^{20 Trp tRNA}
3816862	3816938	-	77	30061571	S3924	-	^{06 Asp tRNA}
3816991	3817109	-	119	30061571	S3925	-	5S ribosomal RNA
3817204	3820107	-	2904	30061571	S3926	-	23S ribosomal RNA
3820301	3820376	-	76	30061571	S3927	-	^{04 Glu tRNA}
3820462	3822003	-	1542	30061571	S3928	-	16S ribosomal RNA
3968763	3968853	-	91	30061571	S4071	-	Sec tRNA
4095462	4095538	+	77	30061571	S4190	-	^{03 Pro tRNA}
4388344	4388428	-	85	30061571	S4485	-	^{15 Leu tRNA}
4458364	4458439	-	76	30061571	S4555	-	^{17 Phe tRNA}
4489107	4489182	+	76	30061571	S4585	-	^{01 Gly tRNA}
4489340	4489415	+	76	30061571	S4586	-	^{01 Gly tRNA}
4489451	4489526	+	76	30061571	S4587	-	^{01 Gly tRNA}
4489562	4489637	+	76	30061571	S4588	-	^{01 Gly tRNA}
4565093	4565179	-	87	30061571	S4671	-	^{15 Leu tRNA}
4565214	4565300	-	87	30061571	S4672	-	^{15 Leu tRNA}
4565329	4565415	-	87	30061571	S4673	-	^{15 Leu tRNA}