Геном прокариот/Материалы:NC 005071

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_005071            2410873 bp    DNA     circular BCT 16-JUN-2006
   DEFINITION  Prochlorococcus marinus str. MIT 9313, complete genome.
   ACCESSION   NC_005071
   VERSION     NC_005071.1  GI:33862273
   KEYWORDS    complete genome.
   SOURCE      Prochlorococcus marinus str. MIT 9313
     ORGANISM  Prochlorococcus marinus str. MIT 9313
               Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae;
               Prochlorococcus.
   REFERENCE   1  (bases 1 to 2410873)
     AUTHORS   Rocap,G., Larimer,F.W., Lamerdin,J., Malfatti,S., Chain,P.,
               Ahlgren,N.A., Arellano,A., Coleman,M., Hauser,L., Hess,W.R.,
               Johnson,Z.I., Land,M., Lindell,D., Post,A.F., Regala,W., Shah,M.,
               Shaw,S.L., Steglich,C., Sullivan,M.B., Ting,C.S., Tolonen,A.,
               Webb,E.A., Zinser,E.R. and Chisholm,S.W.
     TITLE     Genome divergence in two Prochlorococcus ecotypes reflects oceanic
               niche differentiation
     JOURNAL   Nature 424 (6952), 1042-1047 (2003)
      PUBMED   12917642
   REFERENCE   2  (bases 1 to 2410873)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (19-AUG-2003) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2410873)
     AUTHORS   Larimer,F. and Rocap,G.
     CONSRTM   Prochlorococcus genome consortium
     TITLE     Direct Submission
     JOURNAL   Submitted (03-JUL-2003) Submitted on behalf of the Prochlorococcus
               genome consortium, the DOE Joint Genome Institute, Production
               Genomics Facility, 2800 Mitchell Drive, Walnut Creek, CA 94598,
               USA, and the Genome Analysis Group, Oak Ridge National Laboratory,
               1060 Commerce Park Drive, Oak Ridge, TN 37831, USA;
               larimerfw@ornl.gov
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from BX548175.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
42282	42353	-	72	33862273	RNA_44	-	^{01 Gly tRNA}
87820	87891	+	72	33862273	RNA_1	-	^{01 Gly tRNA}
208864	214254	+	5391	33862273	RNA_45	-	rRNA operon
208864	210328	+	1465	33862273	RNA_53	-
210511	210584	+	74	33862273	RNA_2	-	^{14 Ile tRNA}
210594	210666	+	73	33862273	RNA_3	-	^{02 Ala tRNA}
211158	214033	+	2876	33862273	RNA_54	-
214140	214254	+	115	33862273	RNA_55	-
227745	227816	-	72	33862273	RNA_43	-	^{12 Thr tRNA}
227824	227908	-	85	33862273	RNA_42	-	^{18 Tyr tRNA}
329018	329102	+	85	33862273	RNA_4	-	^{08 Ser tRNA}
365281	365387	+	107	33862273	RNA_49	-	signal recognition particle RNA (4.5 S RNA)
370810	370882	-	73	33862273	RNA_41	-	^{09 His tRNA}
379360	379441	-	82	33862273	RNA_40	-	^{15 Leu tRNA}
380928	381011	+	84	33862273	RNA_5	-	^{15 Leu tRNA}
430628	430700	+	73	33862273	RNA_6	-	^{02 Ala tRNA}
518780	518865	+	86	33862273	RNA_7	-	^{15 Leu tRNA}
540453	540526	-	74	33862273	RNA_39	-	^{03 Pro tRNA}
755235	755321	+	87	33862273	RNA_8	-	^{08 Ser tRNA}
819958	820031	+	74	33862273	RNA_9	-	^{16 Met tRNA}
871424	871510	+	87	33862273	RNA_10	-	^{08 Ser tRNA}
904478	904554	+	77	33862273	RNA_11	-	^{16 Met tRNA}
1002550	1002623	+	74	33862273	RNA_12	-	^{03 Pro tRNA}
1129199	1129270	-	72	33862273	RNA_38	-	^{10 Lys tRNA}
1191237	1191312	+	76	33862273	RNA_13	-	^{04 Glu tRNA}
1394722	1394794	+	73	33862273	RNA_14	-	^{20 Trp tRNA}
1395301	1395374	+	74	33862273	RNA_15	-	^{06 Asp tRNA}
1410332	1410403	+	72	33862273	RNA_16	-	^{13 Val tRNA}
1466353	1466426	+	74	33862273	RNA_17	-	^{11 Arg tRNA}
1484518	1484588	-	71	33862273	RNA_37	-	^{01 Gly tRNA}
1522156	1522227	+	72	33862273	RNA_18	-	^{13 Val tRNA}
1623006	1623080	+	75	33862273	RNA_19	-	^{12 Thr tRNA}
1677627	1677897	-	271	33862273	RNA_48	-	tmRNA, 10Sa RNA, SsrA (precursor permuted)
1689824	1689905	-	82	33862273	RNA_36	-	^{15 Leu tRNA}
1748234	1753624	-	5391	33862273	RNA_46	-	rRNA operon
1748234	1748348	-	115	33862273	RNA_52	-
1748455	1751330	-	2876	33862273	RNA_51	-
1751822	1751894	-	73	33862273	RNA_35	-	^{02 Ala tRNA}
1751904	1751977	-	74	33862273	RNA_34	-	^{14 Ile tRNA}
1752160	1753624	-	1465	33862273	RNA_50	-
1762100	1762171	+	72	33862273	RNA_20	-	^{12 Thr tRNA}
1778675	1778750	+	76	33862273	RNA_21	-	^{17 Phe tRNA}
1800851	1800921	-	71	33862273	RNA_33	-	^{19 Cys tRNA}
1816942	1817015	-	74	33862273	RNA_32	-	^{11 Arg tRNA}
1831862	1831933	-	72	33862273	RNA_31	-	^{05 Gln tRNA}
1854201	1854289	+	89	33862273	RNA_22	-	^{08 Ser tRNA}
1870397	1870470	-	74	33862273	RNA_30	-	^{03 Pro tRNA}
1905155	1905227	+	73	33862273	RNA_23	-	^{02 Ala tRNA}
1921407	1921488	-	82	33862273	RNA_29	-	^{15 Leu tRNA}
1956690	1956763	-	74	33862273	RNA_28	-	^{11 Arg tRNA}
2059323	2059396	-	74	33862273	RNA_27	-	^{11 Arg tRNA}
2059435	2059832	+	398	33862273	RNA_47	-	bacterial ribonuclease P RNA component of ribozyme
2101164	2101235	+	72	33862273	RNA_24	-	^{07 Asn tRNA}
2143041	2143115	+	75	33862273	RNA_25	-	Xaa tRNA
2336629	2336700	-	72	33862273	RNA_26	-	^{13 Val tRNA}