Материалы:NC 006155

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_006155            4744671 bp    DNA     circular BCT 26-JUN-2007
   DEFINITION  Yersinia pseudotuberculosis IP 32953, complete genome.
   ACCESSION   NC_006155
   VERSION     NC_006155.1  GI:51594359
   KEYWORDS    complete genome.
   SOURCE      Yersinia pseudotuberculosis IP 32953
     ORGANISM  Yersinia pseudotuberculosis IP 32953
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Yersinia.
   REFERENCE   1  (bases 1 to 4744671)
     AUTHORS   Chain,P.S., Carniel,E., Larimer,F.W., Lamerdin,J., Stoutland,P.O.,
               Regala,W.M., Georgescu,A.M., Vergez,L.M., Land,M.L., Motin,V.L.,
               Brubaker,R.R., Fowler,J., Hinnebusch,J., Marceau,M., Medigue,C.,
               Simonet,M., Chenal-Francisque,V., Souza,B., Dacheux,D.,
               Elliott,J.M., Derbise,A., Hauser,L.J. and Garcia,E.
     TITLE     Insights into the evolution of Yersinia pestis through whole-genome
               comparison with Yersinia pseudotuberculosis
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 101 (38), 13826-13831 (2004)
      PUBMED   15358858
   REFERENCE   2  (bases 1 to 4744671)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (30-AUG-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4744671)
     AUTHORS   Chain,P.S.G., Carniel,E., Garcia,E. and Larimer,F.W.
     TITLE     Direct Submission
     JOURNAL   Submitted (08-FEB-2004) Biology and Biotechnology Research Program,
               Lawrence Livermore National Laboratory, Livermore, CA 94550 USA,
               Yersinia Research Unit, Institute Pasteur, 75724 Paris Cedex 15,
               France, and the Genome Analysis Group, Oak Ridge National
               Laboratory, Oak Ridge, TN 37831 USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from BX936398.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
12249	13794	+	1546	51594359	YPTB_RNA_93	-	16S ribosomal RNA
13928	14003	+	76	51594359	YPTB_RNA_1	-	^{04 Glu tRNA}
14256	17162	+	2907	51594359	YPTB_RNA_94	-	23S ribosomal RNA
17271	17390	+	120	51594359	YPTB_RNA_95	-	5S ribosomal RNA
25940	26047	+	108	51594359	YPTB_RNA_89	-	spf Spot 42 RNA
27205	27459	+	255	51594359	YPTB_RNA_113	-	regulatory RNA CsrC
147319	147579	+	261	51594359	YPTB_RNA_114	-	Cobalamin riboswitch
150806	152351	+	1546	51594359	YPTB_RNA_96	-	16S ribosomal RNA
152485	152560	+	76	51594359	YPTB_RNA_2	-	^{04 Glu tRNA}
152813	155719	+	2907	51594359	YPTB_RNA_97	-	23S ribosomal RNA
155828	155947	+	120	51594359	YPTB_RNA_98	-	5S ribosomal RNA
156071	156147	+	77	51594359	YPTB_RNA_3	-	^{06 Asp tRNA}
156156	156231	+	76	51594359	YPTB_RNA_4	-	^{20 Trp tRNA}
216856	216932	+	77	51594359	YPTB_RNA_5	-	^{11 Arg tRNA}
217016	217091	+	76	51594359	YPTB_RNA_6	-	^{09 His tRNA}
217108	217194	+	87	51594359	YPTB_RNA_7	-	^{15 Leu tRNA}
217270	217346	+	77	51594359	YPTB_RNA_8	-	^{03 Pro tRNA}
320424	321970	+	1547	51594359	YPTB_RNA_99	-	16S ribosomal RNA
322070	322146	+	77	51594359	YPTB_RNA_9	-	^{14 Ile tRNA}
322198	322273	+	76	51594359	YPTB_RNA_10	-	^{02 Ala tRNA}
322492	325399	+	2908	51594359	YPTB_RNA_100	-	23S ribosomal RNA
325508	325627	+	120	51594359	YPTB_RNA_101	-	5S ribosomal RNA
330225	330300	+	76	51594359	YPTB_RNA_11	-	^{12 Thr tRNA}
330319	330403	+	85	51594359	YPTB_RNA_12	-	^{18 Tyr tRNA}
330553	330627	+	75	51594359	YPTB_RNA_13	-	^{01 Gly tRNA}
330634	330709	+	76	51594359	YPTB_RNA_14	-	^{12 Thr tRNA}
360682	362227	+	1546	51594359	YPTB_RNA_102	-	16S ribosomal RNA
362361	362436	+	76	51594359	YPTB_RNA_15	-	^{04 Glu tRNA}
362689	365598	+	2910	51594359	YPTB_RNA_103	-	23S ribosomal RNA
365706	365825	+	120	51594359	YPTB_RNA_104	-	5S ribosomal RNA
470331	470406	-	76	51594359	YPTB_RNA_85	-	^{17 Phe tRNA}
500424	500499	+	76	51594359	YPTB_RNA_16	-	^{01 Gly tRNA}
500591	500666	+	76	51594359	YPTB_RNA_17	-	^{01 Gly tRNA}
500734	500809	+	76	51594359	YPTB_RNA_18	-	^{01 Gly tRNA}
562886	562972	+	87	51594359	YPTB_RNA_19	-	^{15 Leu tRNA}
563033	563109	+	77	51594359	YPTB_RNA_20	-	^{16 Met tRNA}
569847	570030	-	184	51594359	YPTB_RNA_115	-	SraG RNA
626995	627079	+	85	51594359	YPTB_RNA_21	-	^{15 Leu tRNA}
674169	674255	-	87	51594359	YPTB_RNA_84	-	^{15 Leu tRNA}
674351	674437	-	87	51594359	YPTB_RNA_83	-	^{15 Leu tRNA}
674534	674620	-	87	51594359	YPTB_RNA_82	-	^{15 Leu tRNA}
994068	994160	+	93	51594359	YPTB_RNA_22	-	^{08 Ser tRNA}
994169	994245	+	77	51594359	YPTB_RNA_23	-	^{11 Arg tRNA}
994303	994379	+	77	51594359	YPTB_RNA_24	-	^{11 Arg tRNA}
994459	994535	+	77	51594359	YPTB_RNA_25	-	^{11 Arg tRNA}
994615	994686	+	72	51594359	YPTB_RNA_26	-	Xaa tRNA
1018753	1020298	+	1546	51594359	YPTB_RNA_105	-	16S ribosomal RNA
1020398	1020474	+	77	51594359	YPTB_RNA_27	-	^{14 Ile tRNA}
1020526	1020601	+	76	51594359	YPTB_RNA_28	-	^{02 Ala tRNA}
1020820	1023726	+	2907	51594359	YPTB_RNA_106	-	23S ribosomal RNA
1023835	1023954	+	120	51594359	YPTB_RNA_107	-	5S ribosomal RNA
1175598	1175717	+	120	51594359	YPTB_RNA_86	-	SRP RNA
1245199	1245275	+	77	51594359	YPTB_RNA_29	-	^{11 Arg tRNA}
1334962	1335036	-	75	51594359	YPTB_RNA_81	-	^{05 Gln tRNA}
1335042	1335118	-	77	51594359	YPTB_RNA_80	-	^{16 Met tRNA}
1335151	1335225	-	75	51594359	YPTB_RNA_79	-	^{05 Gln tRNA}
1335309	1335383	-	75	51594359	YPTB_RNA_78	-	^{05 Gln tRNA}
1335413	1335497	-	85	51594359	YPTB_RNA_77	-	^{15 Leu tRNA}
1335505	1335581	-	77	51594359	YPTB_RNA_76	-	^{16 Met tRNA}
1359528	1359891	-	364	51594359	YPTB_RNA_88	-	tmRNA
1386989	1387064	+	76	51594359	YPTB_RNA_30	-	^{10 Lys tRNA}
1387092	1387167	+	76	51594359	YPTB_RNA_31	-	^{10 Lys tRNA}
1387195	1387270	+	76	51594359	YPTB_RNA_32	-	^{10 Lys tRNA}
1387298	1387373	+	76	51594359	YPTB_RNA_33	-	^{10 Lys tRNA}
1387402	1387471	+	70	51594359	YPTB_RNA_34	-	^{10 Lys tRNA}
1387569	1387638	+	70	51594359	YPTB_RNA_35	-	Xaa tRNA
1387736	1387805	+	70	51594359	YPTB_RNA_36	-	^{10 Lys tRNA}
1508762	1508903	-	142	51594359	YPTB_RNA_91	-	antisense RNA affecting ompF expression
1510666	1510753	+	88	51594359	YPTB_RNA_37	-	^{08 Ser tRNA}
1510759	1510834	+	76	51594359	YPTB_RNA_38	-	^{12 Thr tRNA}
1543259	1543335	-	77	51594359	YPTB_RNA_75	-	^{03 Pro tRNA}
1759383	1759470	+	88	51594359	YPTB_RNA_39	-	^{08 Ser tRNA}
1949762	1949837	-	76	51594359	YPTB_RNA_74	-	^{07 Asn tRNA}
1960828	1960903	-	76	51594359	YPTB_RNA_73	-	^{07 Asn tRNA}
2014703	2014952	-	250	51594359	YPTB_RNA_116	-	SraC_RyeA RNA
2014813	2014918	+	106	51594359	YPTB_RNA_120	-	RyeB RNA
2090133	2090208	+	76	51594359	YPTB_RNA_40	-	^{10 Lys tRNA}
2096657	2096732	+	76	51594359	YPTB_RNA_41	-	^{01 Gly tRNA}
2096785	2096858	+	74	51594359	YPTB_RNA_42	-	^{19 Cys tRNA}
2096869	2096954	+	86	51594359	YPTB_RNA_43	-	^{15 Leu tRNA}
2249472	2249547	-	76	51594359	YPTB_RNA_72	-	^{07 Asn tRNA}
2368848	2368937	-	90	51594359	YPTB_RNA_71	-	^{08 Ser tRNA}
2376517	2376606	-	90	51594359	YPTB_RNA_70	-	^{08 Ser tRNA}
2469384	2469468	-	85	51594359	YPTB_RNA_69	-	^{18 Tyr tRNA}
2469534	2469618	-	85	51594359	YPTB_RNA_68	-	^{18 Tyr tRNA}
2721115	2721191	+	77	51594359	YPTB_RNA_44	-	^{13 Val tRNA}
2721251	2721327	+	77	51594359	YPTB_RNA_45	-	^{13 Val tRNA}
2721497	2721573	+	77	51594359	YPTB_RNA_46	-	^{13 Val tRNA}
2922674	2923011	+	338	51594359	YPTB_RNA_117	-	rne5 5' UTR element of RNaseE gene
3129140	3129214	-	75	51594359	YPTB_RNA_67	-	^{11 Arg tRNA}
3198555	3198630	-	76	51594359	YPTB_RNA_66	-	^{10 Lys tRNA}
3198830	3198905	-	76	51594359	YPTB_RNA_65	-	^{13 Val tRNA}
3198950	3199025	-	76	51594359	YPTB_RNA_64	-	^{13 Val tRNA}
3199062	3199137	-	76	51594359	YPTB_RNA_63	-	^{13 Val tRNA}
3201059	3201134	+	76	51594359	YPTB_RNA_47	-	^{02 Ala tRNA}
3201212	3201287	+	76	51594359	YPTB_RNA_48	-	^{02 Ala tRNA}
3404860	3405024	+	165	51594359	YPTB_RNA_118	-	tke1 RNA
3497889	3497965	-	77	51594359	YPTB_RNA_62	-	^{06 Asp tRNA}
3505348	3505424	-	77	51594359	YPTB_RNA_61	-	^{06 Asp tRNA}
3505548	3505667	-	120	51594359	YPTB_RNA_108	-	5S ribosomal RNA
3505775	3508681	-	2907	51594359	YPTB_RNA_109	-	23S ribosomal RNA
3508934	3509009	-	76	51594359	YPTB_RNA_60	-	^{04 Glu tRNA}
3509143	3510688	-	1546	51594359	YPTB_RNA_110	-	16S ribosomal RNA
3550076	3550357	-	282	51594359	YPTB_RNA_90	-	regulatory RNA csrB
3562220	3562296	+	77	51594359	YPTB_RNA_49	-	^{16 Met tRNA}
3562464	3562540	+	77	51594359	YPTB_RNA_50	-	^{16 Met tRNA}
3562601	3562677	+	77	51594359	YPTB_RNA_51	-	^{16 Met tRNA}
3719418	3719491	-	74	51594359	YPTB_RNA_59	-	^{01 Gly tRNA}
3749921	3750102	+	182	51594359	YPTB_RNA_92	-	6S RNA
3809995	3810070	+	76	51594359	YPTB_RNA_52	-	^{17 Phe tRNA}
4043205	4043394	-	190	51594359	YPTB_RNA_119	-	RFN element; FMN riboswitch
4062048	4062124	+	77	51594359	YPTB_RNA_53	-	^{16 Met tRNA}
4157130	4157504	-	375	51594359	YPTB_RNA_87	-	RNA component of RNaseP
4367448	4367567	-	120	51594359	YPTB_r01	-	5S ribosomal RNA
4367606	4367681	-	76	51594359	YPTB_RNA_58	-	^{12 Thr tRNA}
4367695	4367814	-	120	51594359	YPTB_RNA_111	-	5S ribosomal RNA
4367922	4370828	-	2907	51594359	YPTB_RNA_112	-	23S ribosomal RNA
4371047	4371122	-	76	51594359	YPTB_RNA_57	-	^{02 Ala tRNA}
4371174	4371250	-	77	51594359	YPTB_RNA_56	-	^{14 Ile tRNA}
4371350	4372891	-	1542	51594359	YPTB_RNA_111.1	-	16S ribosomal RNA
4593512	4593588	-	77	51594359	YPTB_RNA_55	-	^{03 Pro tRNA}
4637882	4637972	-	91	51594359	YPTB_RNA_54	-	Sec tRNA