Материалы:NC 006512

Вы находитесь в Инкубаторе

Это исходный материал (как правило загружен ботом)

Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_006512            2839318 bp    DNA     circular BCT 03-DEC-2005
   DEFINITION  Idiomarina loihiensis L2TR, complete genome.
   ACCESSION   NC_006512
   VERSION     NC_006512.1  GI:56459112
   KEYWORDS    .
   SOURCE      Idiomarina loihiensis L2TR
     ORGANISM  Idiomarina loihiensis L2TR
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Idiomarinaceae; Idiomarina.
   REFERENCE   1  (bases 1 to 2839318)
     AUTHORS   Hou,S., Saw,J.H., Lee,K.S., Freitas,T.A., Belisle,C.,
               Kawarabayasi,Y., Donachie,S.P., Pikina,A., Galperin,M.Y.,
               Koonin,E.V., Makarova,K.S., Omelchenko,M.V., Sorokin,A., Wolf,Y.I.,
               Li,Q.X., Keum,Y.S., Campbell,S., Denery,J., Aizawa,S.I.,
               Shibata,S., Malahoff,A. and Alam,M.
     TITLE     Genome sequence of the deep-sea {gamma}-proteobacterium Idiomarina
               loihiensis reveals amino acid fermentation as a source of carbon
               and energy
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 101 (52), 18036-18041 (2004)
      PUBMED   15596722
   REFERENCE   2  (bases 1 to 2839318)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (09-DEC-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2839318)
     AUTHORS   Hou,S., Saw,J.H., Lee,K.S., Freitas,T.A., Belisle,C.,
               Kawarabayasi,Y., Donachie,S.P., Galperin,M.Y., Koonin,E.V.,
               Makarova,K.S., Omelchenko,M.V., Sorokin,A., Wolf,Y.I., Li,Q.,
               Keum,Y.S., Campbell,S., Denery,J., Aizawa,S.-I., Shibata,S.,
               Malahoff,A. and Alam,M.
     TITLE     Direct Submission
     JOURNAL   Submitted (01-JUL-2004) Microbiology, University of Hawaii at
               Manoa, 2538 The Mall, Snyder 111, Honolulu, HI 96822, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE017340.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
51807	51881	+	75	56459112	ILt0047.1	-	^{11 Arg tRNA}
348104	348176	+	73	56459112	ILt0337.1	-	^{12 Thr tRNA}
348199	348280	+	82	56459112	ILt0337.2	-	^{18 Tyr tRNA}
348329	348400	+	72	56459112	ILt0337.3	-	^{01 Gly tRNA}
348416	348488	+	73	56459112	ILt0337.4	-	^{12 Thr tRNA}
349907	349980	+	74	56459112	ILt0338.1	-	^{20 Trp tRNA}
438750	439000	-	251	56459112	IL0425.1	-	ribonuclease P RNA
709110	709193	-	84	56459112	ILt0651.1	-	^{15 Leu tRNA}
709222	709292	-	71	56459112	ILt0651.2	-	^{19 Cys tRNA}
709302	709374	-	73	56459112	ILt0651.3	-	^{01 Gly tRNA}
715193	715281	-	89	56459112	ILt0657.1	-	^{08 Ser tRNA}
734230	734303	+	74	56459112	ILt0678.1	-	^{03 Pro tRNA}
883929	884010	+	82	56459112	ILt0827.1	-	^{18 Tyr tRNA}
992588	992661	+	74	56459112	ILt0938.1	-	^{16 Met tRNA}
992684	992765	+	82	56459112	ILt0938.2	-	^{15 Leu tRNA}
992790	992861	+	72	56459112	ILt0938.3	-	^{05 Gln tRNA}
992902	992973	+	72	56459112	ILt0938.4	-	^{05 Gln tRNA}
992991	993074	+	84	56459112	ILt0938.5	-	^{15 Leu tRNA}
1026091	1026164	-	74	56459112	ILt0970.1	-	^{16 Met tRNA}
1026243	1026326	-	84	56459112	ILt0970.2	-	^{15 Leu tRNA}
1074965	1075038	-	74	56459112	ILt1007.1	-	^{03 Pro tRNA}
1075069	1075141	-	73	56459112	ILt1007.2	-	^{09 His tRNA}
1075171	1075244	-	74	56459112	ILt1007.3	-	^{11 Arg tRNA}
1075276	1075349	-	74	56459112	ILt1007.4	-	^{03 Pro tRNA}
1147526	1147610	-	85	56459112	ILt1067.1	-	^{08 Ser tRNA}
1163996	1164068	-	73	56459112	ILt1077.1	-	^{10 Lys tRNA}
1164102	1164174	-	73	56459112	ILt1077.2	-	^{10 Lys tRNA}
1233478	1233551	+	74	56459112	ILt1154.1	-	^{11 Arg tRNA}
1262899	1263017	-	119	56459112	ILr1179.1	-	5S ribosomal RNA
1263305	1266061	-	2757	56459112	ILr1179.2	-	23S ribosomal RNA
1266281	1266353	-	73	56459112	ILt1179.1	-	^{02 Ala tRNA}
1266471	1266544	-	74	56459112	ILt1179.2	-	^{14 Ile tRNA}
1266652	1268197	-	1546	56459112	ILr1179.3	-	16S ribosomal RNA
1304306	1304378	+	73	56459112	ILt1213.1	-	^{17 Phe tRNA}
1376974	1377047	-	74	56459112	ILt1281.1	-	^{16 Met tRNA}
1506314	1506387	+	74	56459112	ILt1404.1	-	^{13 Val tRNA}
1770857	1771115	-	259	56459112	IL2641	-	SsrA
1820016	1820089	-	74	56459112	ILt1691.1	-	^{06 Asp tRNA}
1820119	1820192	-	74	56459112	ILt1691.2	-	^{06 Asp tRNA}
1869208	1869281	-	74	56459112	ILt1736.1	-	^{11 Arg tRNA}
1869306	1869379	-	74	56459112	ILt1736.2	-	^{11 Arg tRNA}
1869404	1869493	-	90	56459112	ILt1736.3	-	^{08 Ser tRNA}
1903151	1903223	-	73	56459112	ILt1768.1	-	^{04 Glu tRNA}
1903262	1903334	-	73	56459112	ILt1716.2	-	^{04 Glu tRNA}
1903370	1903442	-	73	56459112	ILt1716.3	-	^{04 Glu tRNA}
1903493	1903565	-	73	56459112	ILt1716.4	-	^{02 Ala tRNA}
1906022	1906094	+	73	56459112	ILt1770.1	-	^{13 Val tRNA}
1906133	1906205	+	73	56459112	ILt1770.2	-	^{13 Val tRNA}
1928016	1928089	+	74	56459112	ILt1791.1	-	^{07 Asn tRNA}
1928115	1928188	+	74	56459112	ILt1791.2	-	^{07 Asn tRNA}
2017169	2017242	-	74	56459112	ILt1885.1	-	^{20 Trp tRNA}
2023643	2023761	-	119	56459112	ILr1888.1	-	5S ribosomal RNA
2024015	2026771	-	2757	56459112	ILr1888.2	-	23S ribosomal RNA
2026991	2027063	-	73	56459112	ILt1888.1	-	^{02 Ala tRNA}
2027326	2027399	-	74	56459112	ILt1888.2	-	^{14 Ile tRNA}
2027508	2029052	-	1545	56459112	ILr1888.3	-	16S ribosomal RNA
2069910	2069992	-	83	56459112	ILt1944.1	-	^{15 Leu tRNA}
2235800	2235987	+	188	56459112	IL2642	-	SsrS
2347520	2347592	-	73	56459112	ILt2197.1	-	^{16 Met tRNA}
2432416	2432538	-	123	56459112	ILr2271.1	-	5S ribosomal RNA
2432826	2435583	-	2758	56459112	ILr2271.2	-	23S ribosomal RNA
2435803	2435875	-	73	56459112	ILt2271.1	-	^{02 Ala tRNA}
2436138	2436211	-	74	56459112	ILt2271.2	-	^{14 Ile tRNA}
2436320	2437864	-	1545	56459112	ILr2271.3	-	16S ribosomal RNA
2465248	2465320	-	73	56459112	ILt2299.1	-	^{01 Gly tRNA}
2465355	2465427	-	73	56459112	ILt2299.2	-	^{01 Gly tRNA}
2748761	2748879	-	119	56459112	ILr2563.1	-	5S ribosomal RNA
2749167	2751925	-	2759	56459112	ILr2563.2	-	23S ribosomal RNA
2752144	2752216	-	73	56459112	ILt2563.1	-	^{02 Ala tRNA}
2752479	2752552	-	74	56459112	ILt2563.2	-	^{14 Ile tRNA}
2752660	2754205	-	1546	56459112	ILr2563.3	-	16S ribosomal RNA