Геном прокариот/Материалы:NC 007298

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007298            4501104 bp    DNA     circular BCT 04-APR-2006
   DEFINITION  Dechloromonas aromatica RCB, complete genome.
   ACCESSION   NC_007298
   VERSION     NC_007298.1  GI:71905642
   KEYWORDS    .
   SOURCE      Dechloromonas aromatica RCB
     ORGANISM  Dechloromonas aromatica RCB
               Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales;
               Rhodocyclaceae; Dechloromonas.
   REFERENCE   1  (bases 1 to 4501104)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G.,
               Trong,S., Kellar,K., Schmutz,J., Larimer,F., Land,M., Ivanova,N.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Dechloromonas aromatica RCB
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4501104)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (08-AUG-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4501104)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G.,
               Trong,S., Kellar,K., Schmutz,J., Larimer,F., Land,M., Ivanova,N.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (04-AUG-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000089.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from John Coates
               (jcoates@micro.siu.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-PGF
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
76243	76316	+	74	71905642	Daro_R0001	-	^{01 Gly tRNA}
76851	78380	+	1530	71905642	Daro_R0002	-	16S ribosomal RNA
78441	78517	+	77	71905642	Daro_R0003	-	^{14 Ile tRNA}
78529	78604	+	76	71905642	Daro_R0004	-	^{02 Ala tRNA}
78816	81698	+	2883	71905642	Daro_R0005	-	23S ribosomal RNA
81796	81909	+	114	71905642	Daro_R0006	-	5S ribosomal RNA
200986	201061	-	76	71905642	Daro_R0007	-	^{16 Met tRNA}
201154	201229	-	76	71905642	Daro_R0008	-	^{10 Lys tRNA}
201248	201323	-	76	71905642	Daro_R0009	-	^{10 Lys tRNA}
347382	347466	+	85	71905642	Daro_R0010	-	^{18 Tyr tRNA}
347506	347579	+	74	71905642	Daro_R0011	-	^{01 Gly tRNA}
347610	347684	+	75	71905642	Daro_R0012	-	^{12 Thr tRNA}
348992	349067	+	76	71905642	Daro_R0013	-	^{20 Trp tRNA}
475156	475231	+	76	71905642	Daro_R0014	-	^{17 Phe tRNA}
496667	496742	+	76	71905642	Daro_R0015	-	^{02 Ala tRNA}
575391	575719	+	329	71905642	Daro_R0016	-	RNA component of RNaseP
586037	586113	-	77	71905642	Daro_R0017	-	^{16 Met tRNA}
715274	716803	+	1530	71905642	Daro_R0018	-	16S ribosomal RNA
716864	716940	+	77	71905642	Daro_R0019	-	^{14 Ile tRNA}
716952	717027	+	76	71905642	Daro_R0020	-	^{02 Ala tRNA}
717239	720121	+	2883	71905642	Daro_R0021	-	23S ribosomal RNA
720219	720332	+	114	71905642	Daro_R0022	-	5S ribosomal RNA
724805	724881	+	77	71905642	Daro_R0023	-	^{03 Pro tRNA}
778283	778358	+	76	71905642	Daro_R0024	-	^{12 Thr tRNA}
855858	855931	+	74	71905642	Daro_R0025	-	^{12 Thr tRNA}
870227	870302	+	76	71905642	Daro_R0026	-	^{16 Met tRNA}
870619	872148	+	1530	71905642	Daro_R0027	-	16S ribosomal RNA
872209	872285	+	77	71905642	Daro_R0028	-	^{14 Ile tRNA}
872297	872372	+	76	71905642	Daro_R0029	-	^{02 Ala tRNA}
872584	875466	+	2883	71905642	Daro_R0030	-	23S ribosomal RNA
875564	875677	+	114	71905642	Daro_R0031	-	5S ribosomal RNA
875842	875942	+	101	71905642	Daro_R0032	-	SRP RNA, RNA component of signal recognition particle
908466	908540	-	75	71905642	Daro_R0033	-	^{11 Arg tRNA}
925627	925714	+	88	71905642	Daro_R0034	-	^{08 Ser tRNA}
1029310	1029394	+	85	71905642	Daro_R0035	-	^{15 Leu tRNA}
1137633	1137708	+	76	71905642	Daro_R0036	-	^{07 Asn tRNA}
1137715	1137790	+	76	71905642	Daro_R0037	-	^{01 Gly tRNA}
1142712	1142787	+	76	71905642	Daro_R0038	-	^{01 Gly tRNA}
1227775	1229304	+	1530	71905642	Daro_R0039	-	16S ribosomal RNA
1229365	1229441	+	77	71905642	Daro_R0040	-	^{14 Ile tRNA}
1229453	1229528	+	76	71905642	Daro_R0041	-	^{02 Ala tRNA}
1229740	1232622	+	2883	71905642	Daro_R0042	-	23S ribosomal RNA
1232720	1232833	+	114	71905642	Daro_R0043	-	5S ribosomal RNA
1413291	1413378	+	88	71905642	Daro_R0044	-	^{08 Ser tRNA}
1437879	1437955	-	77	71905642	Daro_R0045	-	^{06 Asp tRNA}
1437983	1438058	-	76	71905642	Daro_R0046	-	^{04 Glu tRNA}
1438097	1438172	-	76	71905642	Daro_R0047	-	^{02 Ala tRNA}
1438258	1438334	-	77	71905642	Daro_R0048	-	^{06 Asp tRNA}
1438362	1438437	-	76	71905642	Daro_R0049	-	^{04 Glu tRNA}
1438461	1438536	-	76	71905642	Daro_R0050	-	^{02 Ala tRNA}
1440091	1440165	+	75	71905642	Daro_R0051	-	^{13 Val tRNA}
1763155	1763245	+	91	71905642	Daro_R0052	-	^{08 Ser tRNA}
1842121	1842196	-	76	71905642	Daro_R0053	-	^{13 Val tRNA}
1848603	1848678	+	76	71905642	Daro_R0054	-	^{09 His tRNA}
1943197	1943273	+	77	71905642	Daro_R0055	-	^{11 Arg tRNA}
1943321	1943397	+	77	71905642	Daro_R0056	-	^{11 Arg tRNA}
1944928	1945019	-	92	71905642	Daro_R0057	-	Sec tRNA
2154287	2154362	-	76	71905642	Daro_R0058	-	^{07 Asn tRNA}
2190666	2190741	+	76	71905642	Daro_R0059	-	^{01 Gly tRNA}
2190806	2190879	+	74	71905642	Daro_R0060	-	^{19 Cys tRNA}
2190886	2190961	+	76	71905642	Daro_R0061	-	^{01 Gly tRNA}
2191033	2191118	+	86	71905642	Daro_R0062	-	^{15 Leu tRNA}
2524961	2525037	-	77	71905642	Daro_R0063	-	^{06 Asp tRNA}
2646978	2647054	-	77	71905642	Daro_R0064	-	^{11 Arg tRNA}
2647078	2647154	-	77	71905642	Daro_R0065	-	^{03 Pro tRNA}
2711657	2711749	-	93	71905642	Daro_R0066	-	^{08 Ser tRNA}
2867191	2867267	-	77	71905642	Daro_R0067	-	^{03 Pro tRNA}
2874781	2874857	-	77	71905642	Daro_R0068	-	^{13 Val tRNA}
2897901	2897985	-	85	71905642	Daro_R0069	-	^{15 Leu tRNA}
2954257	2954332	+	76	71905642	Daro_R0070	-	^{13 Val tRNA}
2986099	2986173	+	75	71905642	Daro_R0071	-	^{12 Thr tRNA}
3211321	3211405	+	85	71905642	Daro_R0072	-	^{15 Leu tRNA}
3211576	3211660	+	85	71905642	Daro_R0073	-	^{15 Leu tRNA}
3503826	3503909	-	84	71905642	Daro_R0074	-	^{15 Leu tRNA}
3527925	3528009	+	85	71905642	Daro_R0075	-	^{15 Leu tRNA}
3778248	3778324	-	77	71905642	Daro_R0076	-	^{16 Met tRNA}
4008786	4008862	+	77	71905642	Daro_R0077	-	^{05 Gln tRNA}
4026866	4026942	-	77	71905642	Daro_R0078	-	^{11 Arg tRNA}
4389925	4390206	-	282	71905642	Daro_R0079	-	tmRNA