Геном прокариот/Материалы:NC 007335

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007335            1842899 bp    DNA     circular BCT 16-JUN-2006
   DEFINITION  Prochlorococcus marinus str. NATL2A, complete genome.
   ACCESSION   NC_007335
   VERSION     NC_007335.1  GI:72381840
   KEYWORDS    .
   SOURCE      Prochlorococcus marinus str. NATL2A
     ORGANISM  Prochlorococcus marinus str. NATL2A
               Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae;
               Prochlorococcus.
   REFERENCE   1  (bases 1 to 1842899)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Thiel,J., Schmutz,J.,
               Larimer,F., Land,M., Lykidis,A. and Richardson,P.
     TITLE     Complete sequence of Prochlorococcus marinus str. NATL2A
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 1842899)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (12-AUG-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1842899)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Thiel,J., Schmutz,J.,
               Larimer,F., Land,M., Lykidis,A. and Richardson,P.
     TITLE     Direct Submission
     JOURNAL   Submitted (08-AUG-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000095.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Sallie Chisholm
               (chisholm@mit.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-PGF
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
6633	6718	-	86	72381840	PMN2A_R0001	-	^{15 Leu tRNA}
97031	97117	-	87	72381840	PMN2A_R0002	-	^{08 Ser tRNA}
221884	221960	-	77	72381840	PMN2A_R0003	-	^{16 Met tRNA}
246971	247044	-	74	72381840	PMN2A_R0004	-	^{03 Pro tRNA}
296539	296625	+	87	72381840	PMN2A_R0005	-	^{08 Ser tRNA}
347522	347595	+	74	72381840	PMN2A_R0006	-	^{16 Met tRNA}
490082	490153	+	72	72381840	PMN2A_R0007	-	^{01 Gly tRNA}
562378	562454	-	77	72381840	PMN2A_R0008	-	^{03 Pro tRNA}
571642	571713	-	72	72381840	PMN2A_R0009	-	^{10 Lys tRNA}
619098	619170	+	73	72381840	PMN2A_R0010	-	^{04 Glu tRNA}
731255	731341	-	87	72381840	PMN2A_R0011	-	^{08 Ser tRNA}
767394	767467	+	74	72381840	PMN2A_R0012	-	^{11 Arg tRNA}
774522	774594	-	73	72381840	PMN2A_R0013	-	^{02 Ala tRNA}
821196	821277	+	82	72381840	PMN2A_R0014	-	^{15 Leu tRNA}
826578	826650	+	73	72381840	PMN2A_R0015	-	^{09 His tRNA}
831781	831881	-	101	72381840	PMN2A_R0016	-	SRP RNA; RNA component of signal recognitionparticle
846978	847048	-	71	72381840	PMN2A_R0017	-	^{01 Gly tRNA}
879886	879957	+	72	72381840	PMN2A_R0018	-	^{13 Val tRNA}
973848	973919	+	72	72381840	PMN2A_R0019	-	^{12 Thr tRNA}
1048175	1048263	-	89	72381840	PMN2A_R0020	-	^{08 Ser tRNA}
1068668	1068739	+	72	72381840	PMN2A_R0021	-	^{05 Gln tRNA}
1081979	1082052	+	74	72381840	PMN2A_R0022	-	^{11 Arg tRNA}
1097953	1098023	+	71	72381840	PMN2A_R0023	-	^{19 Cys tRNA}
1117566	1117639	-	74	72381840	PMN2A_R0024	-	^{11 Arg tRNA}
1117731	1118062	+	332	72381840	PMN2A_R0025	-	RNA component of RNaseP
1192797	1192868	-	72	72381840	PMN2A_R0026	-	^{01 Gly tRNA}
1241676	1241747	-	72	72381840	PMN2A_R0027	-	^{13 Val tRNA}
1387185	1387414	-	230	72381840	PMN2A_R0028	-	tmRNA
1396415	1396496	-	82	72381840	PMN2A_R0029	-	^{15 Leu tRNA}
1459663	1459734	+	72	72381840	PMN2A_R0030	-	^{07 Asn tRNA}
1567638	1567720	-	83	72381840	PMN2A_R0031	-	^{15 Leu tRNA}
1586551	1586624	-	74	72381840	PMN2A_R0032	-	^{11 Arg tRNA}
1602212	1602284	-	73	72381840	PMN2A_R0033	-	^{16 Met tRNA}
1644967	1645042	-	76	72381840	PMN2A_R0034	-	^{17 Phe tRNA}
1655248	1655319	-	72	72381840	PMN2A_R0035	-	^{12 Thr tRNA}
1663376	1664769	+	1394	72381840	PMN2A_R0036	-	16S ribosomal RNA
1664994	1665067	+	74	72381840	PMN2A_R0037	-	^{14 Ile tRNA}
1665077	1665149	+	73	72381840	PMN2A_R0038	-	^{02 Ala tRNA}
1665459	1668333	+	2875	72381840	PMN2A_R0039	-	23S ribosomal RNA
1668425	1668541	+	117	72381840	PMN2A_R0040	-	5S ribosomal RNA
1682303	1682374	-	72	72381840	PMN2A_R0041	-	^{12 Thr tRNA}
1682386	1682467	-	82	72381840	PMN2A_R0042	-	^{18 Tyr tRNA}
1761579	1761652	-	74	72381840	PMN2A_R0043	-	^{06 Asp tRNA}
1762078	1762150	-	73	72381840	PMN2A_R0044	-	^{20 Trp tRNA}