Материалы:NC 007347

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007347            3806533 bp    DNA     circular BCT 19-DEC-2006
   DEFINITION  Ralstonia eutropha JMP134 chromosome 1, complete sequence.
   ACCESSION   NC_007347
   VERSION     NC_007347.1  GI:73539706
   KEYWORDS    .
   SOURCE      Ralstonia eutropha JMP134
     ORGANISM  Ralstonia eutropha JMP134
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Burkholderiaceae; Cupriavidus.
   REFERENCE   1  (bases 1 to 3806533)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
               Martinez,M., Schmutz,J., Larimer,F., Land,M., Lykidis,A. and
               Richardson,P.
     TITLE     Complete sequence of Chromosome1 of Ralstonia eutropha JMP134
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3806533)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (18-AUG-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3806533)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
               Martinez,M., Schmutz,J., Larimer,F., Land,M., Lykidis,A. and
               Richardson,P.
     TITLE     Direct Submission
     JOURNAL   Submitted (05-AUG-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000090.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Bernardo Gonzalez
               (bgonzale@genes.bio.puc.cl)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-PGF
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
268835	268909	+	75	73539706	Reut_AR0001	-	^{19 Cys tRNA}
371963	372039	-	77	73539706	Reut_AR0002	-	^{05 Gln tRNA}
512266	512548	+	283	73539706	Reut_AR0003	-	RNA component of RNaseP
568479	568555	-	77	73539706	Reut_AR0004	-	^{16 Met tRNA}
823437	823511	-	75	73539706	Reut_AR0005	-	^{01 Gly tRNA}
869360	869435	+	76	73539706	Reut_AR0006	-	^{10 Lys tRNA}
969791	969869	+	79	73539706	Reut_AR0007	-	^{16 Met tRNA}
1049109	1049193	+	85	73539706	Reut_AR0008	-	^{15 Leu tRNA}
1220136	1220229	+	94	73539706	Reut_AR0009	-	^{08 Ser tRNA}
1360574	1360650	+	77	73539706	Reut_AR0010	-	^{13 Val tRNA}
1369110	1369186	+	77	73539706	Reut_AR0011	-	^{03 Pro tRNA}
1381062	1381137	-	76	73539706	Reut_AR0012	-	^{10 Lys tRNA}
1383769	1383844	-	76	73539706	Reut_AR0013	-	^{10 Lys tRNA}
1415840	1415915	-	76	73539706	Reut_AR0014	-	^{16 Met tRNA}
1481480	1481566	+	87	73539706	Reut_AR0015	-	^{15 Leu tRNA}
1492777	1492852	+	76	73539706	Reut_AR0016	-	^{13 Val tRNA}
1492898	1492974	+	77	73539706	Reut_AR0017	-	^{06 Asp tRNA}
1893967	1894079	-	113	73539706	Reut_AR0018	-	5S ribosomal RNA
1894262	1897081	-	2820	73539706	Reut_AR0019	-	23S ribosomal RNA
1897409	1898936	-	1528	73539706	Reut_AR0020	-	16S ribosomal RNA
2099784	2099860	+	77	73539706	Reut_AR0021	-	^{13 Val tRNA}
2208968	2209043	+	76	73539706	Reut_AR0022	-	^{09 His tRNA}
2279458	2279544	+	87	73539706	Reut_AR0023	-	^{15 Leu tRNA}
2325066	2325170	+	105	73539706	Reut_AR0024	-	SRP RNA; RNA component of signal recognition particle
2339420	2339496	-	77	73539706	Reut_AR0025	-	^{06 Asp tRNA}
2339565	2339640	-	76	73539706	Reut_AR0026	-	^{04 Glu tRNA}
2339750	2339825	-	76	73539706	Reut_AR0027	-	^{02 Ala tRNA}
2340014	2340090	-	77	73539706	Reut_AR0028	-	^{06 Asp tRNA}
2340159	2340234	-	76	73539706	Reut_AR0029	-	^{04 Glu tRNA}
2340299	2340374	-	76	73539706	Reut_AR0030	-	^{02 Ala tRNA}
2374392	2374468	-	77	73539706	Reut_AR0031	-	^{11 Arg tRNA}
2376141	2376217	+	77	73539706	Reut_AR0032	-	^{03 Pro tRNA}
2418588	2418662	+	75	73539706	Reut_AR0033	-	^{13 Val tRNA}
2457259	2457349	-	91	73539706	Reut_AR0034	-	^{08 Ser tRNA}
2472896	2472982	+	87	73539706	Reut_AR0035	-	^{15 Leu tRNA}
2475187	2475260	-	74	73539706	Reut_AR0036	-	^{19 Cys tRNA}
2475364	2475439	-	76	73539706	Reut_AR0037	-	^{01 Gly tRNA}
2475510	2475585	-	76	73539706	Reut_AR0038	-	^{01 Gly tRNA}
2521716	2521791	+	76	73539706	Reut_AR0039	-	^{07 Asn tRNA}
2608895	2608969	+	75	73539706	Reut_AR0040	-	^{11 Arg tRNA}
2683363	2683438	+	76	73539706	Reut_AR0041	-	^{12 Thr tRNA}
2708674	2708749	-	76	73539706	Reut_AR0042	-	^{16 Met tRNA}
2709846	2709922	-	77	73539706	Reut_AR0043	-	^{11 Arg tRNA}
2720936	2721025	+	90	73539706	Reut_AR0044	-	^{08 Ser tRNA}
2828530	2828889	+	360	73539706	Reut_AR0045	-	tmRNA
2845426	2845515	-	90	73539706	Reut_AR0046	-	^{08 Ser tRNA}
2966574	2966658	+	85	73539706	Reut_AR0047	-	^{15 Leu tRNA}
3245012	3245088	+	77	73539706	Reut_AR0048	-	^{03 Pro tRNA}
3307719	3307831	-	113	73539706	Reut_AR0049	-	5S ribosomal RNA
3308014	3310833	-	2820	73539706	Reut_AR0050	-	23S ribosomal RNA
3311132	3311207	-	76	73539706	Reut_AR0051	-	^{02 Ala tRNA}
3311219	3311295	-	77	73539706	Reut_AR0052	-	^{14 Ile tRNA}
3311359	3312886	-	1528	73539706	Reut_AR0053	-	16S ribosomal RNA
3401210	3401285	-	76	73539706	Reut_AR0054	-	^{12 Thr tRNA}
3501653	3501728	-	76	73539706	Reut_AR0055	-	^{20 Trp tRNA}
3503044	3503118	-	75	73539706	Reut_AR0056	-	^{12 Thr tRNA}
3503159	3503232	-	74	73539706	Reut_AR0057	-	^{01 Gly tRNA}
3503284	3503369	-	86	73539706	Reut_AR0058	-	^{18 Tyr tRNA}
3503690	3503802	-	113	73539706	Reut_AR0059	-	5S ribosomal RNA
3503985	3506804	-	2820	73539706	Reut_AR0060	-	23S ribosomal RNA
3507102	3507177	-	76	73539706	Reut_AR0061	-	^{02 Ala tRNA}
3507189	3507265	-	77	73539706	Reut_AR0062	-	^{14 Ile tRNA}
3507329	3508856	-	1528	73539706	Reut_AR0063	-	16S ribosomal RNA
3562366	3562441	-	76	73539706	Reut_AR0064	-	^{02 Ala tRNA}
3629526	3629601	-	76	73539706	Reut_AR0065	-	^{11 Arg tRNA}
3731460	3731535	-	76	73539706	Reut_AR0066	-	^{17 Phe tRNA}