Геном прокариот/Материалы:NC 007354

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007354            1315030 bp    DNA     circular BCT 16-AUG-2007
   DEFINITION  Ehrlichia canis str. Jake, complete genome.
   ACCESSION   NC_007354
   VERSION     NC_007354.1  GI:73666633
   KEYWORDS    .
   SOURCE      Ehrlichia canis str. Jake
     ORGANISM  Ehrlichia canis str. Jake
               Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales;
               Anaplasmataceae; Ehrlichia.
   REFERENCE   1  (bases 1 to 1315030)
     AUTHORS   Mavromatis,K., Doyle,C.K., Lykidis,A., Ivanova,N., Francino,M.P.,
               Chain,P., Shin,M., Malfatti,S., Larimer,F., Copeland,A.,
               Detter,J.C., Land,M., Richardson,P.M., Yu,X.J., Walker,D.H.,
               McBride,J.W. and Kyrpides,N.C.
     TITLE     The genome of the obligately intracellular bacterium Ehrlichia
               canis reveals themes of complex membrane structure and immune
               evasion strategies
     JOURNAL   J. Bacteriol. 188 (11), 4015-4023 (2006)
      PUBMED   16707693
   REFERENCE   2  (bases 1 to 1315030)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (22-AUG-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1315030)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Mavrommatis,K. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (25-JUL-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive, Walnut Creek, CA 94598, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000107.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available fro Jere McBride
               (jemcbrid@utmb.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-LLNL
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
338	415	+	78	73666633	Ecaj_R0001	-	^{11 Arg tRNA}
2234	2308	-	75	73666633	Ecaj_R0002	-	^{05 Gln tRNA}
27185	27275	-	91	73666633	Ecaj_R0003	-	^{15 Leu tRNA}
47712	47785	+	74	73666633	Ecaj_R0004	-	^{13 Val tRNA}
69588	69660	+	73	73666633	Ecaj_R0005	-	^{10 Lys tRNA}
75718	75792	-	75	73666633	Ecaj_R0006	-	^{19 Cys tRNA}
156010	156093	-	84	73666633	Ecaj_R0007	-	^{15 Leu tRNA}
167065	167143	+	79	73666633	Ecaj_R0008	-	^{03 Pro tRNA}
167568	167655	-	88	73666633	Ecaj_R0009	-	^{08 Ser tRNA}
190571	190643	+	73	73666633	Ecaj_R0010	-	^{02 Ala tRNA}
245349	245425	+	77	73666633	Ecaj_R0011	-	^{20 Trp tRNA}
259386	259459	+	74	73666633	Ecaj_R0012	-	^{11 Arg tRNA}
285955	287439	+	1485	73666633	Ecaj_R0013	-	16S ribosomal RNA
292601	292687	+	87	73666633	Ecaj_R0014	-	^{15 Leu tRNA}
300143	300215	+	73	73666633	Ecaj_R0015	-	^{10 Lys tRNA}
300396	300479	+	84	73666633	Ecaj_R0016	-	^{15 Leu tRNA}
307599	307673	+	75	73666633	Ecaj_R0017	-	^{16 Met tRNA}
360915	360990	+	76	73666633	Ecaj_R0018	-	^{01 Gly tRNA}
412218	412291	+	74	73666633	Ecaj_R0019	-	^{06 Asp tRNA}
488998	489297	-	300	73666633	Ecaj_R0020	-	tmRNA
489431	489503	-	73	73666633	Ecaj_R0021	-	^{07 Asn tRNA}
494191	494263	-	73	73666633	Ecaj_R0022	-	^{17 Phe tRNA}
503811	503887	-	77	73666633	Ecaj_R0023	-	^{11 Arg tRNA}
548477	548551	+	75	73666633	Ecaj_R0024	-	^{16 Met tRNA}
557852	557927	+	76	73666633	Ecaj_R0025	-	^{16 Met tRNA}
571075	571165	+	91	73666633	Ecaj_R0026	-	^{08 Ser tRNA}
592048	592120	+	73	73666633	Ecaj_R0027	-	^{12 Thr tRNA}
640728	640798	-	71	73666633	Ecaj_R0028	-	^{12 Thr tRNA}
668794	668877	+	84	73666633	Ecaj_R0029	-	^{15 Leu tRNA}
710743	710819	-	77	73666633	Ecaj_R0030	-	^{14 Ile tRNA}
727749	727825	-	77	73666633	Ecaj_R0031	-	^{03 Pro tRNA}
784352	784424	-	73	73666633	Ecaj_R0032	-	^{11 Arg tRNA}
825376	825448	-	73	73666633	Ecaj_R0033	-	^{04 Glu tRNA}
865093	865163	-	71	73666633	Ecaj_R0034	-	^{01 Gly tRNA}
865171	865253	-	83	73666633	Ecaj_R0035	-	^{18 Tyr tRNA}
922361	922647	+	287	73666633	Ecaj_R0036	-	RNA component of RNaseP
958691	958763	-	73	73666633	Ecaj_R0037	-	^{13 Val tRNA}
1098799	1098918	-	120	73666633	Ecaj_R0038	-	5S ribosomal RNA
1098983	1101781	-	2799	73666633	Ecaj_R0039	-	23S ribosomal RNA
1115358	1115430	-	73	73666633	Ecaj_R0040	-	^{09 His tRNA}
1233731	1233821	+	91	73666633	Ecaj_R0041	-	^{08 Ser tRNA}
1309522	1309613	+	92	73666633	Ecaj_R0042	-	SRP RNA; RNA component of signal recognition particle