Материалы:NC 007492

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007492            6438405 bp    DNA     circular BCT 04-APR-2006
   DEFINITION  Pseudomonas fluorescens PfO-1, complete genome.
   ACCESSION   NC_007492
   VERSION     NC_007492.1  GI:77456228
   KEYWORDS    .
   SOURCE      Pseudomonas fluorescens PfO-1
     ORGANISM  Pseudomonas fluorescens PfO-1
               Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
               Pseudomonadaceae; Pseudomonas.
   REFERENCE   1  (bases 1 to 6438405)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H.,
               Schmutz,J., Larimer,F., Land,M., Kyripides,N., Anderson,I. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Pseudomonas fluorescens PfO-1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 6438405)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-OCT-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 6438405)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H.,
               Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (08-AUG-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000094.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Mark Silby
               (mark.silby@tufts.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-LANL
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
121476	123002	+	1527	77456228	Pfl_R1	-	16S ribosomal RNA
123085	123161	+	77	77456228	Pfl_R2	-	^{14 Ile tRNA}
123192	123267	+	76	77456228	Pfl_R3	-	^{02 Ala tRNA}
123512	126403	+	2892	77456228	Pfl_R4	-	23S ribosomal RNA
126568	126682	+	115	77456228	Pfl_R5	-	5S ribosomal RNA
126790	126904	+	115	77456228	Pfl_R6	-	5S ribosomal RNA
224796	224872	-	77	77456228	Pfl_R7	-	^{11 Arg tRNA}
353031	353106	-	76	77456228	Pfl_R8	-	^{12 Thr tRNA}
363599	363674	-	76	77456228	Pfl_R9	-	^{17 Phe tRNA}
617488	617574	-	87	77456228	Pfl_R10	-	^{15 Leu tRNA}
617756	617842	-	87	77456228	Pfl_R11	-	^{15 Leu tRNA}
803037	804563	+	1527	77456228	Pfl_R12	-	16S ribosomal RNA
804646	804722	+	77	77456228	Pfl_R13	-	^{14 Ile tRNA}
804753	804828	+	76	77456228	Pfl_R14	-	^{02 Ala tRNA}
805073	807964	+	2892	77456228	Pfl_R15	-	23S ribosomal RNA
808130	808244	+	115	77456228	Pfl_R16	-	5S ribosomal RNA
878831	879220	-	390	77456228	Pfl_R17	-	tmRNA
911327	911412	+	86	77456228	Pfl_R18	-	^{15 Leu tRNA}
911510	911586	+	77	77456228	Pfl_R19	-	^{16 Met tRNA}
920579	920654	+	76	77456228	Pfl_R20	-	^{12 Thr tRNA}
1365707	1365783	-	77	77456228	Pfl_R21	-	^{16 Met tRNA}
1365987	1366063	-	77	77456228	Pfl_R22	-	^{16 Met tRNA}
1506385	1506458	-	74	77456228	Pfl_R23	-	^{01 Gly tRNA}
1547918	1548007	+	90	77456228	Pfl_R24	-	^{08 Ser tRNA}
1860616	1860691	+	76	77456228	Pfl_R25	-	^{13 Val tRNA}
1860711	1860787	+	77	77456228	Pfl_R26	-	^{06 Asp tRNA}
1860978	1861053	+	76	77456228	Pfl_R27	-	^{13 Val tRNA}
1861073	1861149	+	77	77456228	Pfl_R28	-	^{06 Asp tRNA}
1938174	1938263	+	90	77456228	Pfl_R29	-	^{08 Ser tRNA}
2014278	2014394	+	117	77456228	Pfl_R30	-	SRP RNA; RNA component of signal recognition particle
2135240	2135315	-	76	77456228	Pfl_R31	-	^{07 Asn tRNA}
2144196	2144271	+	76	77456228	Pfl_R32	-	^{02 Ala tRNA}
2144351	2144426	+	76	77456228	Pfl_R33	-	^{04 Glu tRNA}
2144480	2144555	+	76	77456228	Pfl_R34	-	^{02 Ala tRNA}
2144634	2144709	+	76	77456228	Pfl_R35	-	^{04 Glu tRNA}
2176406	2176481	+	76	77456228	Pfl_R36	-	^{13 Val tRNA}
2176537	2176613	+	77	77456228	Pfl_R37	-	^{06 Asp tRNA}
2176707	2176783	+	77	77456228	Pfl_R38	-	^{06 Asp tRNA}
2184300	2184376	+	77	77456228	Pfl_R39	-	^{13 Val tRNA}
2207840	2207916	+	77	77456228	Pfl_R40	-	^{03 Pro tRNA}
2549539	2551065	+	1527	77456228	Pfl_R41	-	16S ribosomal RNA
2551148	2551224	+	77	77456228	Pfl_R42	-	^{14 Ile tRNA}
2551255	2551330	+	76	77456228	Pfl_R43	-	^{02 Ala tRNA}
2551575	2554466	+	2892	77456228	Pfl_R44	-	23S ribosomal RNA
2554632	2554746	+	115	77456228	Pfl_R45	-	5S ribosomal RNA
2710914	2710988	-	75	77456228	Pfl_R46	-	^{05 Gln tRNA}
2845505	2845592	-	88	77456228	Pfl_R47	-	^{08 Ser tRNA}
3506452	3506538	-	87	77456228	Pfl_R48	-	^{15 Leu tRNA}
3506734	3506807	-	74	77456228	Pfl_R49	-	^{19 Cys tRNA}
3506854	3506929	-	76	77456228	Pfl_R50	-	^{01 Gly tRNA}
4181262	4181337	-	76	77456228	Pfl_R51	-	Xaa tRNA
4188207	4188282	-	76	77456228	Pfl_R52	-	^{09 His tRNA}
4188359	4188443	-	85	77456228	Pfl_R53	-	^{15 Leu tRNA}
4188502	4188577	-	76	77456228	Pfl_R54	-	^{09 His tRNA}
4188610	4188686	-	77	77456228	Pfl_R55	-	^{11 Arg tRNA}
4416516	4416630	-	115	77456228	Pfl_R56	-	5S ribosomal RNA
4416795	4419686	-	2892	77456228	Pfl_R57	-	23S ribosomal RNA
4419931	4420006	-	76	77456228	Pfl_R58	-	^{02 Ala tRNA}
4420037	4420113	-	77	77456228	Pfl_R59	-	^{14 Ile tRNA}
4420196	4421722	-	1527	77456228	Pfl_R60	-	16S ribosomal RNA
4728952	4729027	-	76	77456228	Pfl_R61	-	^{01 Gly tRNA}
4729030	4729105	-	76	77456228	Pfl_R62	-	^{04 Glu tRNA}
4729163	4729238	-	76	77456228	Pfl_R63	-	^{01 Gly tRNA}
4729241	4729316	-	76	77456228	Pfl_R64	-	^{04 Glu tRNA}
4729421	4729496	-	76	77456228	Pfl_R65	-	^{01 Gly tRNA}
4729499	4729574	-	76	77456228	Pfl_R66	-	^{04 Glu tRNA}
4816076	4816152	-	77	77456228	Pfl_R67	-	^{11 Arg tRNA}
4820541	4820617	-	77	77456228	Pfl_R68	-	^{11 Arg tRNA}
4820690	4820766	-	77	77456228	Pfl_R69	-	^{11 Arg tRNA}
4820839	4820915	-	77	77456228	Pfl_R70	-	^{11 Arg tRNA}
4821023	4821113	-	91	77456228	Pfl_R71	-	^{08 Ser tRNA}
4959539	4959614	-	76	77456228	Pfl_R72	-	^{10 Lys tRNA}
5221822	5221906	+	85	77456228	Pfl_R73	-	^{15 Leu tRNA}
5286536	5286826	-	291	77456228	Pfl_R74	-	RNA component of RNaseP
5356918	5356992	+	75	77456228	Pfl_R75	-	^{05 Gln tRNA}
5364391	5364467	+	77	77456228	Pfl_R76	-	^{16 Met tRNA}
5393082	5393196	-	115	77456228	Pfl_R77	-	5S ribosomal RNA
5393352	5396243	-	2892	77456228	Pfl_R78	-	23S ribosomal RNA
5396488	5396563	-	76	77456228	Pfl_R79	-	^{02 Ala tRNA}
5396594	5396670	-	77	77456228	Pfl_R80	-	^{14 Ile tRNA}
5396753	5398279	-	1527	77456228	Pfl_R81	-	16S ribosomal RNA
5451112	5451188	-	77	77456228	Pfl_R82	-	^{03 Pro tRNA}
5451286	5451361	-	76	77456228	Pfl_R83	-	^{10 Lys tRNA}
5451367	5451443	-	77	77456228	Pfl_R84	-	^{03 Pro tRNA}
5451453	5451528	-	76	77456228	Pfl_R85	-	^{07 Asn tRNA}
5722233	5722308	-	76	77456228	Pfl_R86	-	^{20 Trp tRNA}
5723641	5723716	-	76	77456228	Pfl_R87	-	^{12 Thr tRNA}
5723743	5723816	-	74	77456228	Pfl_R88	-	^{01 Gly tRNA}
5723842	5723926	-	85	77456228	Pfl_R89	-	^{18 Tyr tRNA}
5726344	5726458	-	115	77456228	Pfl_R90	-	5S ribosomal RNA
5726624	5729515	-	2892	77456228	Pfl_R91	-	23S ribosomal RNA
5729760	5729835	-	76	77456228	Pfl_R92	-	^{02 Ala tRNA}
5729866	5729942	-	77	77456228	Pfl_R93	-	^{14 Ile tRNA}
5730025	5731551	-	1527	77456228	Pfl_R94	-	16S ribosomal RNA
5791565	5791641	+	77	77456228	Pfl_R95	-	^{16 Met tRNA}