Геном прокариот/Материалы:NC 007493

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007493            3188609 bp    DNA     circular BCT 20-APR-2007
   DEFINITION  Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence.
   ACCESSION   NC_007493
   VERSION     NC_007493.1  GI:77461965
   KEYWORDS    .
   SOURCE      Rhodobacter sphaeroides 2.4.1
     ORGANISM  Rhodobacter sphaeroides 2.4.1
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
               Rhodobacteraceae; Rhodobacter.
   REFERENCE   1  (bases 1 to 3188609)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Richardson,P.,
               Mackenzie,C., Choudhary,M., Larimer,F., Hauser,L.J., Land,M.,
               Donohue,T.J. and Kaplan,S.
     CONSRTM   The Rhodobacter sphaeroides Genome Consortium
     TITLE     Complete Sequence of Chromosome 1 of Rhodobacter sphaeroides 2.4.1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3188609)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-OCT-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3188609)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Richardson,P.,
               Mackenzie,C., Choudhary,M., Larimer,F., Hauser,L.J., Land,M.,
               Donohue,T.J. and Kaplan,S.
     CONSRTM   The Rhodobacter sphaeroides Genome Consortium
     TITLE     Direct Submission
     JOURNAL   Submitted (07-SEP-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000143.
               URL -- http://www.jgi.doe.gov
                      http://www.rhodobacter.org
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
                         Samuel Kaplan (Samuel.Kaplan@uth.tmc.edu)
                         Ronald C. Mackenzie (Ronald.C.Mackenzie@uth.tmc.edu)
               Group Alias sphaeroides@uth.tmc.edu
               Draft sequencing done at US DOE Joint Genome Institute
               Closure and finishing done at The Department of Microbiology and
               Molecular Genetics, University of Texas-Houson Health Science
               Center, 6431 Fannin St. Houston, TX  77030-1501, USA
               Source DNA and bacteria available from Chris Mackenzie
               (Ronald.C.Mackenzie@uth.tmc.edu) and Samuel Kaplan
               (Samuel.Kaplan@uth.tmc.edu)
               The Rhodobacter sphaeroides 2.4.1 strain used in this project was
               submitted to the American Type Culture Collection and has been
               given the identifier ATCC BAA-808.
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
1	1464	+	1464	77461965	RSP_4294	-	16S ribosomal RNA
1686	1762	+	77	77461965	RSP_4324	-	^{14 Ile tRNA}
1810	1885	+	76	77461965	RSP_4325	-	^{02 Ala tRNA}
2130	5012	+	2883	77461965	RSP_4295	-	23S ribosomal RNA
5112	5226	+	115	77461965	RSP_4293	-	5S ribosomal RNA
5272	5348	+	77	77461965	RSP_4307	-	^{16 Met tRNA}
92706	92781	-	76	77461965	RSP_4318	-	^{12 Thr tRNA}
215732	215821	-	90	77461965	RSP_4302	-	^{08 Ser tRNA}
255196	255271	-	76	77461965	RSP_4310	-	^{11 Arg tRNA}
289879	289954	+	76	77461965	RSP_4298	-	^{20 Trp tRNA}
479857	479943	+	87	77461965	RSP_4338	-	^{15 Leu tRNA}
512637	512720	+	84	77461965	RSP_4301	-	^{15 Leu tRNA}
560555	560630	-	76	77461965	RSP_4315	-	^{16 Met tRNA}
675421	675497	-	77	77461965	RSP_4297	-	^{11 Arg tRNA}
683851	683925	-	75	77461965	RSP_4344	-	^{01 Gly tRNA}
740867	741183	-	317	77461965	RSP_4341	-	tmRNA, 10Sa RNA
766852	766926	+	75	77461965	RSP_4345	-	^{04 Glu tRNA}
857015	857098	-	84	77461965	RSP_4340	-	^{18 Tyr tRNA}
890768	891120	+	353	77461965	RSP_4342	-	RNA component of RNase P
972793	972869	+	77	77461965	RSP_4313	-	^{03 Pro tRNA}
1251312	1251389	-	78	77461965	RSP_4331	-	^{03 Pro tRNA}
1413287	1413360	-	74	77461965	RSP_4305	-	^{01 Gly tRNA}
1479346	1479420	+	75	77461965	RSP_4327	-	^{05 Gln tRNA}
1479511	1479585	+	75	77461965	RSP_4346	-	^{05 Gln tRNA}
1508343	1508417	-	75	77461965	RSP_4328	-	^{13 Val tRNA}
1609145	1609228	-	84	77461965	RSP_4326	-	^{15 Leu tRNA}
1678919	1678995	-	77	77461965	RSP_4317	-	^{06 Asp tRNA}
1679031	1679107	-	77	77461965	RSP_4316	-	^{06 Asp tRNA}
1807746	1807817	+	72	77461965	RSP_4304	-	^{12 Thr tRNA}
1843556	1843630	+	75	77461965	RSP_4296	-	^{01 Gly tRNA}
1849076	1849149	-	74	77461965	RSP_4323	-	Xaa tRNA
1852143	1852216	-	74	77461965	RSP_4322	-	^{19 Cys tRNA}
1857117	1857201	-	85	77461965	RSP_4321	-	^{15 Leu tRNA}
1920665	1920739	+	75	77461965	RSP_4299	-	^{07 Asn tRNA}
1931645	1931716	+	72	77461965	RSP_4300	-	^{08 Ser tRNA}
1942439	1942528	-	90	77461965	RSP_4314	-	^{08 Ser tRNA}
2139072	2139146	+	75	77461965	RSP_4312	-	^{04 Glu tRNA}
2344688	2344764	+	77	77461965	RSP_4334	-	^{11 Arg tRNA}
2361949	2362024	-	76	77461965	RSP_4333	-	^{17 Phe tRNA}
2370733	2370807	+	75	77461965	RSP_4335	-	^{12 Thr tRNA}
2455963	2456063	+	101	77461965	RSP_4343	-	SRP RNA, 4.5S RNA
2495608	2495684	+	77	77461965	RSP_4336	-	^{09 His tRNA}
2608052	2608128	-	77	77461965	RSP_4311	-	^{03 Pro tRNA}
2687477	2687551	+	75	77461965	RSP_4329	-	^{10 Lys tRNA}
2741730	2741805	+	76	77461965	RSP_4330	-	^{02 Ala tRNA}
2813672	2813748	-	77	77461965	RSP_4320	-	^{11 Arg tRNA}
2916083	2916167	+	85	77461965	RSP_4332	-	^{15 Leu tRNA}
3176758	3176832	-	75	77461965	RSP_4309	-	^{13 Val tRNA}