Геном прокариот/Материалы:NC 007498

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007498            3665893 bp    DNA     circular BCT 18-MAY-2007
   DEFINITION  Pelobacter carbinolicus DSM 2380, complete genome.
   ACCESSION   NC_007498
   VERSION     NC_007498.2  GI:90960985
   KEYWORDS    .
   SOURCE      Pelobacter carbinolicus DSM 2380
     ORGANISM  Pelobacter carbinolicus DSM 2380
               Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales;
               Pelobacteraceae; Pelobacter.
   REFERENCE   1  (bases 1 to 3665893)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Chertkov,O.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Ivanova,N., Lovley,D.R., Blunt-Harris,E.L., DiDonato,R.,
               Aklujkar,M., Haveman,S., Butler,J., Chaudhuri,S.K., DiDonato,L.N.,
               Ding,Y.R., Glaven,R., Segura-Gonzalez,D., Izallalen,M., Kaye,J.,
               Kim,B.C., Juarez-Lopez,K., Mester,T., Postier,B., Risso,C.,
               Tran,H., Brown,P., Nicoll,J.S., Huang,K., Keller,K., Alm,E. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Pelobacter carbinolicus DSM 2380
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3665893)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Chertkov,O.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Ivanova,N., Lovley,D.R., Blunt-Harris,E.L., DiDonato,R.,
               Aklujkar,M., Haveman,S., Butler,J., Chaudhuri,S.K., DiDonato,L.N.,
               Ding,Y.R., Glaven,R., Segura-Gonzalez,D., Izallalen,M., Kaye,J.,
               Kim,B.C., Juarez-Lopez,K., Mester,T., Postier,B., Risso,C.,
               Tran,H., Brown,P., Nicoll,J.S., Huang,K., Keller,K., Alm,E. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (20-SEP-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
     REMARK    Sequence update by submitter
   REFERENCE   3  (bases 1 to 3665893)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (20-OCT-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   4  (bases 1 to 3665893)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chertkov,O.,
               Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (07-OCT-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000142.
               On Apr 1, 2006 this sequence version replaced gi:77917618.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3436109
               Source DNA available from Derek Lovley (dlovley@umass.edu)
               Bacteria available from DSMZ 2380
               Contacts: Derek Lovley (dlovley@umass.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
262331	262406	+	76	90960985	Pcar_R0001	-	^{10 Lys tRNA}
262412	262489	+	78	90960985	Pcar_R0002	-	^{04 Glu tRNA}
263125	263200	+	76	90960985	Pcar_R0003	-	^{10 Lys tRNA}
263206	263283	+	78	90960985	Pcar_R0004	-	^{04 Glu tRNA}
409594	409679	+	86	90960985	Pcar_R0005	-	^{08 Ser tRNA}
409807	409900	+	94	90960985	Pcar_R0006	-	^{08 Ser tRNA}
409987	410063	+	77	90960985	Pcar_R0007	-	^{11 Arg tRNA}
410607	410694	+	88	90960985	Pcar_R0008	-	^{08 Ser tRNA}
461695	461782	+	88	90960985	Pcar_R0009	-	^{08 Ser tRNA}
461860	461883	+	24	90960985	Pcar_R0010	-
514641	514717	-	77	90960985	Pcar_R0011	-	^{16 Met tRNA}
786828	786904	-	77	90960985	Pcar_R0012	-	^{03 Pro tRNA}
834733	834808	+	76	90960985	Pcar_R0013	-	^{12 Thr tRNA}
834855	834939	+	85	90960985	Pcar_R0014	-	^{18 Tyr tRNA}
835063	835139	+	77	90960985	Pcar_R0015	-	^{01 Gly tRNA}
835175	835250	+	76	90960985	Pcar_R0016	-	^{12 Thr tRNA}
836832	836908	+	77	90960985	Pcar_R0017	-	^{20 Trp tRNA}
882990	883066	+	77	90960985	Pcar_R0018	-	^{16 Met tRNA}
939476	939551	-	76	90960985	Pcar_R0019	-	^{12 Thr tRNA}
981495	981588	+	94	90960985	Pcar_R0020	-	Sec tRNA
1147261	1147346	-	86	90960985	Pcar_R0021	-	^{15 Leu tRNA}
1165075	1165150	-	76	90960985	Pcar_R0022	-	^{02 Ala tRNA}
1168114	1168190	+	77	90960985	Pcar_R0023	-	^{16 Met tRNA}
1544543	1544617	-	75	90960985	Pcar_R0024	-	^{01 Gly tRNA}
1544706	1544780	-	75	90960985	Pcar_R0025	-	^{01 Gly tRNA}
1559548	1559634	+	87	90960985	Pcar_R0026	-	^{15 Leu tRNA}
1648307	1648383	+	77	90960985	Pcar_R0027	-	^{03 Pro tRNA}
1648391	1648467	+	77	90960985	Pcar_R0028	-	^{11 Arg tRNA}
1666100	1666174	+	75	90960985	Pcar_R0029	-	^{13 Val tRNA}
1678921	1678997	+	77	90960985	Pcar_R0030	-	^{11 Arg tRNA}
1744882	1744968	+	87	90960985	Pcar_R0031	-	^{15 Leu tRNA}
1746454	1746540	+	87	90960985	Pcar_R0032	-	^{15 Leu tRNA}
1748036	1748110	+	75	90960985	Pcar_R0033	-	^{13 Val tRNA}
1837403	1837479	+	77	90960985	Pcar_R0034	-	^{03 Pro tRNA}
1918571	1918645	-	75	90960985	Pcar_R0035	-	^{01 Gly tRNA}
1923759	1923832	-	74	90960985	Pcar_R0036	-	^{05 Gln tRNA}
1929459	1929532	-	74	90960985	Pcar_R0037	-	^{19 Cys tRNA}
1967381	1967457	-	77	90960985	Pcar_R0038	-	^{06 Asp tRNA}
1967476	1967551	-	76	90960985	Pcar_R0039	-	^{13 Val tRNA}
1967639	1967715	-	77	90960985	Pcar_R0040	-	^{06 Asp tRNA}
1967734	1967809	-	76	90960985	Pcar_R0041	-	^{13 Val tRNA}
1967818	1967894	-	77	90960985	Pcar_R0042	-	^{06 Asp tRNA}
1974135	1974217	-	83	90960985	Pcar_R0043	-	^{15 Leu tRNA}
1974381	1974456	-	76	90960985	Pcar_R0044	-	^{09 His tRNA}
2135011	2135368	-	358	90960985	Pcar_R0045	-
2336448	2336522	-	75	90960985	Pcar_R0046	-	^{05 Gln tRNA}
2475643	2475729	-	87	90960985	Pcar_R0047	-	^{15 Leu tRNA}
2746913	2747023	-	111	90960985	Pcar_R0048	-	5S ribosomal RNA
2747152	2750107	-	2956	90960985	Pcar_R0049	-	23S ribosomal RNA
2750249	2750324	-	76	90960985	Pcar_R0050	-	^{02 Ala tRNA}
2750334	2750410	-	77	90960985	Pcar_R0051	-	^{14 Ile tRNA}
2750635	2752105	-	1471	90960985	Pcar_R0052	-	16S ribosomal RNA
2752495	2752605	-	111	90960985	Pcar_R0053	-	5S ribosomal RNA
2752734	2755689	-	2956	90960985	Pcar_R0054	-	23S ribosomal RNA
2755831	2755906	-	76	90960985	Pcar_R0055	-	^{02 Ala tRNA}
2755916	2755992	-	77	90960985	Pcar_R0056	-	^{14 Ile tRNA}
2756217	2757687	-	1471	90960985	Pcar_R0057	-	16S ribosomal RNA
2997845	2997921	+	77	90960985	Pcar_R0058	-	^{11 Arg tRNA}
3126815	3127144	-	330	90960985	Pcar_R0059	-
3129309	3129384	-	76	90960985	Pcar_R0060	-	^{16 Met tRNA}
3317316	3317388	-	73	90960985	Pcar_R0061	-	^{15 Leu tRNA}
3437068	3437143	-	76	90960985	Pcar_R0062	-	^{07 Asn tRNA}
3627395	3627470	-	76	90960985	Pcar_R0063	-	^{17 Phe tRNA}