Геном прокариот/Материалы:NC 007510

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007510            3694126 bp    DNA     circular BCT 18-JAN-2006
   DEFINITION  Burkholderia sp. 383 chromosome 1, complete sequence.
   ACCESSION   NC_007510
   VERSION     NC_007510.1  GI:78064658
   KEYWORDS    .
   SOURCE      Burkholderia sp. 383
     ORGANISM  Burkholderia sp. 383
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.
   REFERENCE   1  (bases 1 to 3694126)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome 1 of Burkholderia sp. 383
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3694126)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-OCT-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3694126)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (11-OCT-2005) US DOE Joint Genome Institute, 2400
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000151.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Jim Tiedje
               (tiedjej@pilot.msu.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-LLNL
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
22552	22664	-	113	78064658	Bcep18194_AR0009	-	5S ribosomal RNA
22796	25677	-	2882	78064658	Bcep18194_AR0010	-	23S ribosomal RNA
26071	27550	-	1480	78064658	Bcep18194_AR0011	-	16S ribosomal RNA
34991	35064	+	74	78064658	Bcep18194_AR0012	-	^{13 Val tRNA}
180109	180181	+	73	78064658	Bcep18194_AR0013	-	^{11 Arg tRNA}
252761	252833	+	73	78064658	Bcep18194_AR0014	-	^{02 Ala tRNA}
293394	294873	+	1480	78064658	Bcep18194_AR0015	-	16S ribosomal RNA
294937	295010	+	74	78064658	Bcep18194_AR0016	-	^{14 Ile tRNA}
295055	295127	+	73	78064658	Bcep18194_AR0017	-	^{02 Ala tRNA}
295424	298305	+	2882	78064658	Bcep18194_AR0018	-	23S ribosomal RNA
298437	298549	+	113	78064658	Bcep18194_AR0019	-	5S ribosomal RNA
300859	300941	+	83	78064658	Bcep18194_AR0020	-	^{18 Tyr tRNA}
300989	301059	+	71	78064658	Bcep18194_AR0021	-	^{01 Gly tRNA}
301087	301158	+	72	78064658	Bcep18194_AR0022	-	^{12 Thr tRNA}
302478	302550	+	73	78064658	Bcep18194_AR0023	-	^{20 Trp tRNA}
405712	405784	+	73	78064658	Bcep18194_AR0024	-	^{12 Thr tRNA}
507418	508897	+	1480	78064658	Bcep18194_AR0025	-	16S ribosomal RNA
508960	509033	+	74	78064658	Bcep18194_AR0026	-	^{14 Ile tRNA}
509078	509150	+	73	78064658	Bcep18194_AR0027	-	^{02 Ala tRNA}
509441	512322	+	2882	78064658	Bcep18194_AR0028	-	23S ribosomal RNA
512454	512566	+	113	78064658	Bcep18194_AR0029	-	5S ribosomal RNA
551819	551892	-	74	78064658	Bcep18194_AR0030	-	^{03 Pro tRNA}
659636	659982	+	347	78064658	Bcep18194_AR0031	-	RNA component of RNaseP
804185	804258	-	74	78064658	Bcep18194_AR0032	-	^{10 Lys tRNA}
947456	947527	-	72	78064658	Bcep18194_AR0033	-	^{01 Gly tRNA}
1012109	1012196	+	88	78064658	Bcep18194_AR0034	-	^{08 Ser tRNA}
1031995	1032079	-	85	78064658	Bcep18194_AR0035	-	^{08 Ser tRNA}
1039408	1039481	-	74	78064658	Bcep18194_AR0036	-	^{11 Arg tRNA}
1039545	1039618	-	74	78064658	Bcep18194_AR0037	-	^{11 Arg tRNA}
1039689	1039762	-	74	78064658	Bcep18194_AR0038	-	^{11 Arg tRNA}
1053831	1053903	-	73	78064658	Bcep18194_AR0039	-	^{12 Thr tRNA}
1083647	1084016	+	370	78064658	Bcep18194_AR0040	-	tmRNA
1146373	1146445	-	73	78064658	Bcep18194_AR0041	-	^{07 Asn tRNA}
1146524	1146596	-	73	78064658	Bcep18194_AR0042	-	^{07 Asn tRNA}
1192554	1192626	+	73	78064658	Bcep18194_AR0043	-	^{01 Gly tRNA}
1192683	1192755	+	73	78064658	Bcep18194_AR0044	-	^{01 Gly tRNA}
1192810	1192882	+	73	78064658	Bcep18194_AR0045	-	^{01 Gly tRNA}
1192986	1193056	+	71	78064658	Bcep18194_AR0046	-	^{19 Cys tRNA}
1413852	1413925	-	74	78064658	Bcep18194_AR0047	-	^{03 Pro tRNA}
1423235	1423308	+	74	78064658	Bcep18194_AR0048	-	^{11 Arg tRNA}
1597046	1597119	+	74	78064658	Bcep18194_AR0049	-	^{13 Val tRNA}
1609994	1610067	+	74	78064658	Bcep18194_AR0050	-	^{03 Pro tRNA}
1678842	1678925	-	84	78064658	Bcep18194_AR0051	-	^{15 Leu tRNA}
1679340	1679423	-	84	78064658	Bcep18194_AR0052	-	^{15 Leu tRNA}
1683057	1683140	-	84	78064658	Bcep18194_AR0053	-	^{15 Leu tRNA}
1695868	1695941	-	74	78064658	Bcep18194_AR0054	-	^{16 Met tRNA}
1704086	1704158	+	73	78064658	Bcep18194_AR0055	-	^{09 His tRNA}
2173126	2173228	-	103	78064658	Bcep18194_AR0056	-	SRP RNA; RNA component of signal recognition particle
2275220	2275293	-	74	78064658	Bcep18194_AR0057	-	^{06 Asp tRNA}
2275320	2275392	-	73	78064658	Bcep18194_AR0058	-	^{13 Val tRNA}
2298099	2298182	-	84	78064658	Bcep18194_AR0059	-	^{15 Leu tRNA}
2425170	2425243	-	74	78064658	Bcep18194_AR0060	-	^{06 Asp tRNA}
2425320	2425392	-	73	78064658	Bcep18194_AR0061	-	^{04 Glu tRNA}
2425462	2425535	-	74	78064658	Bcep18194_AR0062	-	^{06 Asp tRNA}
2425617	2425689	-	73	78064658	Bcep18194_AR0063	-	^{04 Glu tRNA}
2425756	2425829	-	74	78064658	Bcep18194_AR0064	-	^{06 Asp tRNA}
2425912	2425984	-	73	78064658	Bcep18194_AR0065	-	^{04 Glu tRNA}
2426126	2426198	-	73	78064658	Bcep18194_AR0066	-	^{02 Ala tRNA}
2445364	2445454	-	91	78064658	Bcep18194_AR0067	-	^{08 Ser tRNA}
2531133	2531206	-	74	78064658	Bcep18194_AR0068	-	^{16 Met tRNA}
2555270	2555341	+	72	78064658	Bcep18194_AR0069	-	^{13 Val tRNA}
2609652	2609739	+	88	78064658	Bcep18194_AR0070	-	^{08 Ser tRNA}
2638876	2638988	-	113	78064658	Bcep18194_AR0071	-	5S ribosomal RNA
2639120	2642001	-	2882	78064658	Bcep18194_AR0072	-	23S ribosomal RNA
2642298	2642370	-	73	78064658	Bcep18194_AR0073	-	^{02 Ala tRNA}
2642415	2642488	-	74	78064658	Bcep18194_AR0074	-	^{14 Ile tRNA}
2642551	2644030	-	1480	78064658	Bcep18194_AR0075	-	16S ribosomal RNA
2675201	2675282	-	82	78064658	Bcep18194_AR0076	-	^{15 Leu tRNA}
2812939	2813010	+	72	78064658	Bcep18194_AR0077	-	^{11 Arg tRNA}
2818441	2818514	+	74	78064658	Bcep18194_AR0078	-	^{16 Met tRNA}
2923510	2923591	+	82	78064658	Bcep18194_AR0079	-	^{15 Leu tRNA}
3114495	3114568	+	74	78064658	Bcep18194_AR0080	-	^{16 Met tRNA}
3276156	3276229	+	74	78064658	Bcep18194_AR0081	-	^{05 Gln tRNA}
3638037	3638109	-	73	78064658	Bcep18194_AR0082	-	^{17 Phe tRNA}
3655607	3655679	+	73	78064658	Bcep18194_AR0083	-	^{10 Lys tRNA}