Материалы:NC 007520

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007520            2427734 bp    DNA     circular BCT 22-NOV-2006
   DEFINITION  Thiomicrospira crunogena XCL-2, complete genome.
   ACCESSION   NC_007520
   VERSION     NC_007520.2  GI:118139508
   KEYWORDS    .
   SOURCE      Thiomicrospira crunogena XCL-2
     ORGANISM  Thiomicrospira crunogena XCL-2
               Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales;
               Piscirickettsiaceae; Thiomicrospira.
   REFERENCE   1  (bases 1 to 2427734)
     AUTHORS   Scott,K.M., Sievert,S.M., Abril,F.N., Ball,L.A., Barrett,C.J.,
               Blake,R.A., Boller,A.J., Chain,P.S., Clark,J.A., Davis,C.R.,
               Detter,C., Do,K.F., Dobrinski,K.P., Faza,B.I., Fitzpatrick,K.A.,
               Freyermuth,S.K., Harmer,T.L., Hauser,L.J., Hugler,M., Kerfeld,C.A.,
               Klotz,M.G., Kong,W.W., Land,M., Lapidus,A., Larimer,F.W.,
               Longo,D.L., Lucas,S., Malfatti,S.A., Massey,S.E., Martin,D.D.,
               McCuddin,Z., Meyer,F., Moore,J.L., Ocampo,L.H., Paul,J.H.,
               Paulsen,I.T., Reep,D.K., Ren,Q., Ross,R.L., Sato,P.Y., Thomas,P.,
               Tinkham,L.E. and Zeruth,G.T.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     The Genome of Deep-Sea Vent Chemolithoautotroph Thiomicrospira
               crunogena XCL-2
     JOURNAL   (er) PLoS Biol. 4 (12), E383 (2006)
      PUBMED   17105352
   REFERENCE   2  (bases 1 to 2427734)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (01-NOV-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2427734)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T.,
               Hammon,N., Israni,S., Pitluck,S., Schmutz,J., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Larimer,F., Land,M., Lykidis,A.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (27-JUL-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive, Walnut Creek, CA 94598, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000109.
               On Nov 17, 2006 this sequence version replaced gi:78484346.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Kathleen Scott
               (kscott@cas.usf.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-LLNL
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
328455	328539	+	85	118139508	Tcr_R0001	-	^{18 Tyr tRNA}
328562	328636	+	75	118139508	Tcr_R0002	-	^{01 Gly tRNA}
328707	328782	+	76	118139508	Tcr_R0003	-	^{12 Thr tRNA}
330124	330200	+	77	118139508	Tcr_R0004	-	^{20 Trp tRNA}
442921	442995	+	75	118139508	Tcr_R0005	-	^{05 Gln tRNA}
446774	446850	+	77	118139508	Tcr_R0006	-	^{16 Met tRNA}
590549	590624	+	76	118139508	Tcr_R0007	-	^{07 Asn tRNA}
591784	591898	+	115	118139508	Tcr_R0008	-	SRP RNA; RNA component of signal recognitionparticle
617698	617774	+	77	118139508	Tcr_R0009	-	^{03 Pro tRNA}
627897	628208	+	312	118139508	Tcr_R0010	-	RNA component of RNaseP
793925	794000	-	76	118139508	Tcr_R0011	-	^{09 His tRNA}
794029	794105	-	77	118139508	Tcr_R0012	-	^{11 Arg tRNA}
794167	794243	-	77	118139508	Tcr_R0013	-	^{03 Pro tRNA}
839313	839403	+	91	118139508	Tcr_R0014	-	^{08 Ser tRNA}
839535	839611	+	77	118139508	Tcr_R0015	-	^{11 Arg tRNA}
889277	889361	+	85	118139508	Tcr_R0016	-	^{15 Leu tRNA}
904217	904293	+	77	118139508	Tcr_R0017	-	^{16 Met tRNA}
980488	980563	+	76	118139508	Tcr_R0018	-	^{10 Lys tRNA}
980611	980686	+	76	118139508	Tcr_R0019	-	^{10 Lys tRNA}
1243378	1243452	+	75	118139508	Tcr_R0020	-	^{01 Gly tRNA}
1243457	1243530	+	74	118139508	Tcr_R0021	-	^{19 Cys tRNA}
1243584	1243670	+	87	118139508	Tcr_R0022	-	^{15 Leu tRNA}
1288577	1288652	+	76	118139508	Tcr_R0023	-	^{13 Val tRNA}
1288670	1288746	+	77	118139508	Tcr_R0024	-	^{06 Asp tRNA}
1288784	1288859	+	76	118139508	Tcr_R0025	-	^{13 Val tRNA}
1288898	1288974	+	77	118139508	Tcr_R0026	-	^{06 Asp tRNA}
1331880	1331955	-	76	118139508	Tcr_R0027	-	^{04 Glu tRNA}
1332058	1332132	-	75	118139508	Tcr_R0028	-	^{01 Gly tRNA}
1332137	1332212	-	76	118139508	Tcr_R0029	-	^{04 Glu tRNA}
1332325	1332400	-	76	118139508	Tcr_R0030	-	^{02 Ala tRNA}
1469945	1470021	-	77	118139508	Tcr_R0031	-	^{13 Val tRNA}
1470038	1470124	-	87	118139508	Tcr_R0032	-	^{15 Leu tRNA}
1520762	1521116	+	355	118139508	Tcr_R0033	-	tmRNA
1631987	1632101	-	115	118139508	Tcr_R0034	-	5S ribosomal RNA
1632269	1635129	-	2861	118139508	Tcr_R0035	-	23S ribosomal RNA
1635606	1635681	-	76	118139508	Tcr_R0036	-	^{02 Ala tRNA}
1635755	1635831	-	77	118139508	Tcr_R0037	-	^{14 Ile tRNA}
1635964	1637454	-	1491	118139508	Tcr_R0038	-	16S ribosomal RNA
1737521	1737612	-	92	118139508	Tcr_R0039	-	^{08 Ser tRNA}
1880915	1881005	-	91	118139508	Tcr_R0040	-	^{08 Ser tRNA}
1949799	1949913	-	115	118139508	Tcr_R0041	-	5S ribosomal RNA
1950081	1952941	-	2861	118139508	Tcr_R0042	-	23S ribosomal RNA
1953417	1953492	-	76	118139508	Tcr_R0043	-	^{02 Ala tRNA}
1953566	1953642	-	77	118139508	Tcr_R0044	-	^{14 Ile tRNA}
1953775	1955265	-	1491	118139508	Tcr_R0045	-	16S ribosomal RNA
1981549	1981625	-	77	118139508	Tcr_R0046	-	^{16 Met tRNA}
2038693	2038767	-	75	118139508	Tcr_R0047	-	^{11 Arg tRNA}
2134366	2134441	-	76	118139508	Tcr_R0048	-	^{12 Thr tRNA}
2136089	2136203	-	115	118139508	Tcr_R0049	-	5S ribosomal RNA
2136371	2139231	-	2861	118139508	Tcr_R0050	-	23S ribosomal RNA
2139707	2139782	-	76	118139508	Tcr_R0051	-	^{02 Ala tRNA}
2139856	2139932	-	77	118139508	Tcr_R0052	-	^{14 Ile tRNA}
2140065	2141555	-	1491	118139508	Tcr_R0053	-	16S ribosomal RNA
2345497	2345572	+	76	118139508	Tcr_R0054	-	^{17 Phe tRNA}
2345610	2345693	+	84	118139508	Tcr_R0055	-	^{15 Leu tRNA}