Геном прокариот/Материалы:NC 007575

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007575            2201561 bp    DNA     circular BCT 04-APR-2006
   DEFINITION  Thiomicrospira denitrificans ATCC 33889, complete genome.
   ACCESSION   NC_007575
   VERSION     NC_007575.1  GI:78776201
   KEYWORDS    .
   SOURCE      Thiomicrospira denitrificans ATCC 33889
     ORGANISM  Thiomicrospira denitrificans ATCC 33889
               Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
               Helicobacteraceae.
   REFERENCE   1  (bases 1 to 2201561)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Thiomicrospira denitrificans ATCC 33889
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2201561)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (03-NOV-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2201561)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (11-OCT-2005) US DOE Joint Genome Institute, 2400
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000153.
               URL -- http://www.jgi.doe.gov
               Source DNA available from Kathleen Scott
               (kscott@choma1.cas.usf.edu)
               Bacteria available from ATCC: ATCC 33889
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-LLNL
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
48708	48796	+	89	78776201	Tmden_R0001	-	^{08 Ser tRNA}
68810	68898	-	89	78776201	Tmden_R0002	-	^{08 Ser tRNA}
68928	69001	-	74	78776201	Tmden_R0003	-	^{19 Cys tRNA}
69027	69113	-	87	78776201	Tmden_R0004	-	^{15 Leu tRNA}
69162	69236	-	75	78776201	Tmden_R0005	-	^{01 Gly tRNA}
209647	209757	+	111	78776201	Tmden_R0006	-	SRP RNA; RNA component of signal recognition particle
231140	231217	+	78	78776201	Tmden_R0007	-	^{03 Pro tRNA}
231241	231317	+	77	78776201	Tmden_R0008	-	^{09 His tRNA}
231360	231436	+	77	78776201	Tmden_R0009	-	^{11 Arg tRNA}
231452	231528	+	77	78776201	Tmden_R0010	-	^{11 Arg tRNA}
231550	231633	+	84	78776201	Tmden_R0011	-	^{15 Leu tRNA}
342504	342580	+	77	78776201	Tmden_R0012	-	^{12 Thr tRNA}
342635	342719	+	85	78776201	Tmden_R0013	-	^{18 Tyr tRNA}
342733	342809	+	77	78776201	Tmden_R0014	-	^{01 Gly tRNA}
342965	343039	+	75	78776201	Tmden_R0015	-	^{12 Thr tRNA}
344581	344657	+	77	78776201	Tmden_R0016	-	^{20 Trp tRNA}
432364	432447	+	84	78776201	Tmden_R0017	-	^{15 Leu tRNA}
453120	454567	+	1448	78776201	Tmden_R0018	-	16S ribosomal RNA
454740	454815	+	76	78776201	Tmden_R0019	-	^{02 Ala tRNA}
455114	457997	+	2884	78776201	Tmden_R0020	-	23S ribosomal RNA
458180	458295	+	116	78776201	Tmden_R0021	-	5S ribosomal RNA
576631	578078	+	1448	78776201	Tmden_R0022	-	16S ribosomal RNA
578251	578326	+	76	78776201	Tmden_R0023	-	^{02 Ala tRNA}
578625	581509	+	2885	78776201	Tmden_R0024	-	23S ribosomal RNA
581655	581770	+	116	78776201	Tmden_R0025	-	5S ribosomal RNA
643899	643975	+	77	78776201	Tmden_R0026	-	^{16 Met tRNA}
643990	644064	+	75	78776201	Tmden_R0027	-	^{07 Asn tRNA}
644314	644388	-	75	78776201	Tmden_R0028	-	^{07 Asn tRNA}
659518	659592	-	75	78776201	Tmden_R0029	-	^{04 Glu tRNA}
659615	659690	-	76	78776201	Tmden_R0030	-	^{10 Lys tRNA}
725079	726526	+	1448	78776201	Tmden_R0031	-	16S ribosomal RNA
726699	726774	+	76	78776201	Tmden_R0032	-	^{02 Ala tRNA}
727073	729956	+	2884	78776201	Tmden_R0033	-	23S ribosomal RNA
730139	730254	+	116	78776201	Tmden_R0034	-	5S ribosomal RNA
810425	810500	+	76	78776201	Tmden_R0035	-	^{10 Lys tRNA}
810514	810590	+	77	78776201	Tmden_R0036	-	^{06 Asp tRNA}
810608	810683	+	76	78776201	Tmden_R0037	-	^{13 Val tRNA}
810710	810785	+	76	78776201	Tmden_R0038	-	^{04 Glu tRNA}
810817	810892	+	76	78776201	Tmden_R0039	-	^{13 Val tRNA}
811014	811090	+	77	78776201	Tmden_R0040	-	^{06 Asp tRNA}
830401	830477	+	77	78776201	Tmden_R0041	-	^{16 Met tRNA}
1091865	1091948	-	84	78776201	Tmden_R0042	-	^{15 Leu tRNA}
1121471	1121763	+	293	78776201	Tmden_R0043	-	RNA component of RNaseP
1123303	1123377	+	75	78776201	Tmden_R0044	-	^{04 Glu tRNA}
1247908	1247984	+	77	78776201	Tmden_R0045	-	^{16 Met tRNA}
1248003	1248077	+	75	78776201	Tmden_R0046	-	^{05 Gln tRNA}
1248101	1248177	+	77	78776201	Tmden_R0047	-	^{16 Met tRNA}
1269325	1269398	+	74	78776201	Tmden_R0048	-	^{05 Gln tRNA}
1516998	1517087	-	90	78776201	Tmden_R0049	-	^{08 Ser tRNA}
1697755	1697830	+	76	78776201	Tmden_R0050	-	^{17 Phe tRNA}
1697966	1698041	+	76	78776201	Tmden_R0051	-	^{17 Phe tRNA}
1717112	1717494	+	383	78776201	Tmden_R0052	-	tmRNA
1764023	1764099	-	77	78776201	Tmden_R0053	-	^{11 Arg tRNA}
1778103	1778178	+	76	78776201	Tmden_R0054	-	^{13 Val tRNA}
1791908	1791984	+	77	78776201	Tmden_R0055	-	^{12 Thr tRNA}
2141020	2141135	-	116	78776201	Tmden_R0056	-	5S ribosomal RNA
2141318	2144201	-	2884	78776201	Tmden_R0057	-	23S ribosomal RNA
2144484	2144560	-	77	78776201	Tmden_R0058	-	^{14 Ile tRNA}
2144733	2146180	-	1448	78776201	Tmden_R0059	-	16S ribosomal RNA