Геном прокариот/Материалы:NC 007577

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007577            1709204 bp    DNA     circular BCT 16-JUN-2006
   DEFINITION  Prochlorococcus marinus str. MIT 9312, complete genome.
   ACCESSION   NC_007577
   VERSION     NC_007577.1  GI:78778385
   KEYWORDS    .
   SOURCE      Prochlorococcus marinus str. MIT 9312
     ORGANISM  Prochlorococcus marinus str. MIT 9312
               Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae;
               Prochlorococcus.
   REFERENCE   1  (bases 1 to 1709204)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Thiel,J., Schmutz,J.,
               Larimer,F., Land,M., Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Prochlorococcus marinus str. MIT 9312
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 1709204)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (03-NOV-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1709204)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Thiel,J., Schmutz,J.,
               Larimer,F., Land,M., Kyrpides,N., Lykidis,A. and Richardson,P.
     TITLE     Direct Submission
     JOURNAL   Submitted (27-JUL-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive, Walnut Creek, CA 94598, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000111.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Sallie Chisholm
               (chisholm@mit.edu)
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
58087	58337	-	251	78778385	PMT9312_R0001	-	tmRNA
67209	67290	-	82	78778385	PMT9312_R0002	-	^{15 Leu tRNA}
124451	124522	+	72	78778385	PMT9312_R0003	-	^{07 Asn tRNA}
230241	230322	+	82	78778385	PMT9312_R0004	-	^{15 Leu tRNA}
249759	249832	-	74	78778385	PMT9312_R0005	-	^{11 Arg tRNA}
264902	264974	-	73	78778385	PMT9312_R0006	-	^{16 Met tRNA}
300889	300964	-	76	78778385	PMT9312_R0007	-	^{17 Phe tRNA}
309600	309671	-	72	78778385	PMT9312_R0008	-	^{12 Thr tRNA}
317580	319044	+	1465	78778385	PMT9312_R0009	-	16S ribosomal RNA
319170	319243	+	74	78778385	PMT9312_R0010	-	^{14 Ile tRNA}
319256	319328	+	73	78778385	PMT9312_R0011	-	^{02 Ala tRNA}
319585	322458	+	2874	78778385	PMT9312_R0012	-	23S ribosomal RNA
322525	322638	+	114	78778385	PMT9312_R0013	-	5S ribosomal RNA
365504	365575	-	72	78778385	PMT9312_R0014	-	^{12 Thr tRNA}
365586	365667	-	82	78778385	PMT9312_R0015	-	^{18 Tyr tRNA}
445827	445900	-	74	78778385	PMT9312_R0016	-	^{06 Asp tRNA}
446279	446351	-	73	78778385	PMT9312_R0017	-	^{20 Trp tRNA}
532723	532808	+	86	78778385	PMT9312_R0018	-	^{15 Leu tRNA}
620639	620725	-	87	78778385	PMT9312_R0019	-	^{08 Ser tRNA}
780231	780307	-	77	78778385	PMT9312_R0020	-	^{03 Pro tRNA}
833252	833338	+	87	78778385	PMT9312_R0021	-	^{08 Ser tRNA}
874026	874099	+	74	78778385	PMT9312_R0022	-	^{16 Met tRNA}
914319	914395	+	77	78778385	PMT9312_R0023	-	^{16 Met tRNA}
999489	999561	-	73	78778385	PMT9312_R0024	-	^{04 Glu tRNA}
1043185	1043256	+	72	78778385	PMT9312_R0025	-	^{10 Lys tRNA}
1052661	1052737	+	77	78778385	PMT9312_R0026	-	^{03 Pro tRNA}
1075970	1076040	+	71	78778385	PMT9312_R0027	-	Xaa tRNA
1173755	1173839	-	85	78778385	PMT9312_R0028	-	^{08 Ser tRNA}
1203666	1203739	+	74	78778385	PMT9312_R0029	-	^{11 Arg tRNA}
1258197	1258272	+	76	78778385	PMT9312_R0030	-	^{02 Ala tRNA}
1259082	1259150	+	69	78778385	PMT9312_R0031	-	Xaa tRNA
1312364	1312445	+	82	78778385	PMT9312_R0032	-	^{15 Leu tRNA}
1317625	1317697	+	73	78778385	PMT9312_R0033	-	^{09 His tRNA}
1322690	1322791	-	102	78778385	PMT9312_R0034	-	SRP RNA
1334795	1334865	-	71	78778385	PMT9312_R0035	-	^{01 Gly tRNA}
1366383	1366454	+	72	78778385	PMT9312_R0036	-	^{13 Val tRNA}
1486163	1486234	+	72	78778385	PMT9312_R0037	-	^{12 Thr tRNA}
1520737	1520825	-	89	78778385	PMT9312_R0038	-	^{08 Ser tRNA}
1540668	1540739	+	72	78778385	PMT9312_R0039	-	^{05 Gln tRNA}
1553369	1553442	+	74	78778385	PMT9312_R0040	-	^{11 Arg tRNA}
1568001	1568071	+	71	78778385	PMT9312_R0041	-	^{19 Cys tRNA}
1585608	1585681	-	74	78778385	PMT9312_R0042	-	^{11 Arg tRNA}
1585779	1586083	+	305	78778385	PMT9312_R0043	-	RNA component of RNaseP
1622062	1622133	-	72	78778385	PMT9312_R0044	-	^{01 Gly tRNA}
1668616	1668687	-	72	78778385	PMT9312_R0045	-	^{13 Val tRNA}