Геном прокариот/Материалы:NC 007614

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007614            3184243 bp    DNA     circular BCT 31-MAR-2006
   DEFINITION  Nitrosospira multiformis ATCC 25196 chromosome 1, complete
               sequence.
   ACCESSION   NC_007614
   VERSION     NC_007614.1  GI:82701135
   KEYWORDS    .
   SOURCE      Nitrosospira multiformis ATCC 25196
     ORGANISM  Nitrosospira multiformis ATCC 25196
               Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales;
               Nitrosomonadaceae; Nitrosospira.
   REFERENCE   1  (bases 1 to 3184243)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome 1 of Nitrosospira multiformis ATCC
               25196
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3184243)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-NOV-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3184243)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (08-AUG-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000103.
               URL -- http://www.jgi.doe.gov
               Source DNA available from Dan Arp (arpd@bcc.orst.edu)
               Bacteria available from ATCC: ATCC 25196
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-LLNL
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
27371	27446	+	76	82701135	Nmul_AR0001	-	^{11 Arg tRNA}
80715	80788	+	74	82701135	Nmul_AR0002	-	^{01 Gly tRNA}
142086	142161	+	76	82701135	Nmul_AR0003	-	^{02 Ala tRNA}
155336	155411	+	76	82701135	Nmul_AR0004	-	^{10 Lys tRNA}
218904	218980	-	77	82701135	Nmul_AR0005	-	^{11 Arg tRNA}
241013	241249	-	237	82701135	Nmul_AR0006	-	RNA component of RNaseP
253129	253205	+	77	82701135	Nmul_AR0007	-	^{03 Pro tRNA}
253241	253317	+	77	82701135	Nmul_AR0008	-	^{11 Arg tRNA}
253378	253452	+	75	82701135	Nmul_AR0009	-	^{09 His tRNA}
285113	285189	-	77	82701135	Nmul_AR0010	-	^{13 Val tRNA}
553914	553990	+	77	82701135	Nmul_AR0011	-	^{03 Pro tRNA}
562629	564157	+	1529	82701135	Nmul_AR0012	-	16S ribosomal RNA
564282	564358	+	77	82701135	Nmul_AR0013	-	^{14 Ile tRNA}
564366	564441	+	76	82701135	Nmul_AR0014	-	^{02 Ala tRNA}
564814	567702	+	2889	82701135	Nmul_AR0015	-	23S ribosomal RNA
567825	567942	+	118	82701135	Nmul_AR0016	-	5S ribosomal RNA
673637	673711	+	75	82701135	Nmul_AR0017	-	^{05 Gln tRNA}
874636	874720	+	85	82701135	Nmul_AR0018	-	^{18 Tyr tRNA}
874898	874971	+	74	82701135	Nmul_AR0019	-	^{01 Gly tRNA}
875060	875134	+	75	82701135	Nmul_AR0020	-	^{12 Thr tRNA}
876463	876538	+	76	82701135	Nmul_AR0021	-	^{20 Trp tRNA}
1082394	1082485	-	92	82701135	Nmul_AR0022	-	^{08 Ser tRNA}
1162686	1162761	-	76	82701135	Nmul_AR0023	-	^{12 Thr tRNA}
1257731	1257815	+	85	82701135	Nmul_AR0024	-	^{15 Leu tRNA}
1464533	1464607	+	75	82701135	Nmul_AR0025	-	^{01 Gly tRNA}
1464755	1464828	+	74	82701135	Nmul_AR0026	-	^{19 Cys tRNA}
1488892	1488980	+	89	82701135	Nmul_AR0027	-	^{15 Leu tRNA}
1838011	1838086	-	76	82701135	Nmul_AR0028	-	^{04 Glu tRNA}
1838145	1838220	-	76	82701135	Nmul_AR0029	-	^{02 Ala tRNA}
1840080	1840154	+	75	82701135	Nmul_AR0030	-	^{13 Val tRNA}
1935662	1935737	-	76	82701135	Nmul_AR0031	-	^{07 Asn tRNA}
2074756	2074832	-	77	82701135	Nmul_AR0032	-	^{03 Pro tRNA}
2142335	2142438	-	104	82701135	Nmul_AR0033	-	4.5S ribosomal RNA component of signal recognition particle (SRP)
2144593	2144669	-	77	82701135	Nmul_AR0034	-	^{16 Met tRNA}
2232983	2233075	-	93	82701135	Nmul_AR0035	-	^{08 Ser tRNA}
2244919	2245005	+	87	82701135	Nmul_AR0036	-	^{15 Leu tRNA}
2261847	2261923	+	77	82701135	Nmul_AR0037	-	^{11 Arg tRNA}
2348630	2348706	-	77	82701135	Nmul_AR0038	-	^{16 Met tRNA}
2480674	2481035	-	362	82701135	Nmul_AR0039	-	tmRNA
2514714	2514801	-	88	82701135	Nmul_AR0040	-	^{08 Ser tRNA}
2628672	2628764	-	93	82701135	Nmul_AR0041	-	^{08 Ser tRNA}
2662578	2662654	-	77	82701135	Nmul_AR0042	-	^{06 Asp tRNA}
2662667	2662742	-	76	82701135	Nmul_AR0043	-	^{13 Val tRNA}
2669090	2669174	-	85	82701135	Nmul_AR0044	-	^{15 Leu tRNA}
2769529	2769615	+	87	82701135	Nmul_AR0045	-	^{15 Leu tRNA}
2791773	2791848	-	76	82701135	Nmul_AR0046	-	^{16 Met tRNA}
3043258	3043333	-	76	82701135	Nmul_AR0047	-	^{17 Phe tRNA}
3123890	3123965	+	76	82701135	Nmul_AR0048	-	^{10 Lys tRNA}
3157579	3157654	+	76	82701135	Nmul_AR0049	-	^{12 Thr tRNA}