Геном прокариот/Материалы:NC 007643

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007643            4352825 bp    DNA     circular BCT 03-APR-2006
   DEFINITION  Rhodospirillum rubrum ATCC 11170, complete genome.
   ACCESSION   NC_007643
   VERSION     NC_007643.1  GI:83591340
   KEYWORDS    .
   SOURCE      Rhodospirillum rubrum ATCC 11170
     ORGANISM  Rhodospirillum rubrum ATCC 11170
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
               Rhodospirillaceae; Rhodospirillum.
   REFERENCE   1  (bases 1 to 4352825)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Munk,A.C.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J.,
               Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K., Richardson,P.,
               Zhang,Y., Roberts,G., Reslewic,S., Zhou,S. and Schwartz,D.C.
     TITLE     Complete sequence of the chromosome of Rhodospirillum rubrum ATCC
               11170
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4352825)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-DEC-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4352825)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Munk,A.C.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J.,
               Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K. and Richardson,P.
     TITLE     Direct Submission
     JOURNAL   Submitted (08-DEC-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000230.
               URL -- http://www.jgi.doe.gov
               Source DNA available from Gary Roberts (groberts@bact.wisc.edu)
               Bacteria available from ATCC: ATCC 11170
               Contacts: Gary Roberts (groberts@bact.wisc.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
17016	17102	-	87	83591340	Rru_AR0001	-	^{15 Leu tRNA}
117325	117401	-	77	83591340	Rru_AR0002	-	^{11 Arg tRNA}
151241	151317	+	77	83591340	Rru_AR0003	-	^{11 Arg tRNA}
192528	194004	+	1477	83591340	Rru_AR0004	-	16S ribosomal RNA
194189	194265	+	77	83591340	Rru_AR0005	-	^{14 Ile tRNA}
194332	194407	+	76	83591340	Rru_AR0006	-	^{02 Ala tRNA}
194770	197527	+	2758	83591340	Rru_AR0007	-	23S ribosomal RNA
197647	197761	+	115	83591340	Rru_AR0008	-	5S ribosomal RNA
197858	197934	+	77	83591340	Rru_AR0009	-	^{16 Met tRNA}
306906	306979	+	74	83591340	Rru_AR0010	-	^{05 Gln tRNA}
324100	324174	-	75	83591340	Rru_AR0011	-	^{05 Gln tRNA}
363106	363181	+	76	83591340	Rru_AR0012	-	^{02 Ala tRNA}
363384	363459	+	76	83591340	Rru_AR0013	-	^{02 Ala tRNA}
407699	407790	+	92	83591340	Rru_AR0014	-	^{08 Ser tRNA}
468041	468126	-	86	83591340	Rru_AR0015	-	^{15 Leu tRNA}
559697	559772	+	76	83591340	Rru_AR0016	-	^{10 Lys tRNA}
795406	795496	+	91	83591340	Rru_AR0017	-	^{08 Ser tRNA}
911398	912874	+	1477	83591340	Rru_AR0018	-	16S ribosomal RNA
913057	913133	+	77	83591340	Rru_AR0019	-	^{14 Ile tRNA}
913200	913275	+	76	83591340	Rru_AR0020	-	^{02 Ala tRNA}
913637	916394	+	2758	83591340	Rru_AR0021	-	23S ribosomal RNA
916513	916627	+	115	83591340	Rru_AR0022	-	5S ribosomal RNA
916723	916799	+	77	83591340	Rru_AR0023	-	^{16 Met tRNA}
1145454	1145802	-	349	83591340	Rru_AR0024	-	RNA component of RNase P
1160163	1160238	+	76	83591340	Rru_AR0025	-	^{04 Glu tRNA}
1465406	1465495	+	90	83591340	Rru_AR0026	-	^{08 Ser tRNA}
1792276	1792351	-	76	83591340	Rru_AR0027	-	^{04 Glu tRNA}
1825837	1825921	+	85	83591340	Rru_AR0028	-	^{15 Leu tRNA}
1833693	1833768	+	76	83591340	Rru_AR0029	-	^{13 Val tRNA}
1934224	1934300	+	77	83591340	Rru_AR0030	-	^{03 Pro tRNA}
1934676	1934752	+	77	83591340	Rru_AR0031	-	^{11 Arg tRNA}
1960034	1960110	+	77	83591340	Rru_AR0032	-	^{03 Pro tRNA}
1998244	1998333	+	90	83591340	Rru_AR0033	-	^{08 Ser tRNA}
2032987	2033062	-	76	83591340	Rru_AR0034	-	^{10 Lys tRNA}
2094273	2094346	+	74	83591340	Rru_AR0035	-	^{19 Cys tRNA}
2094428	2094502	+	75	83591340	Rru_AR0036	-	^{07 Asn tRNA}
2305924	2306010	-	87	83591340	Rru_AR0037	-	^{15 Leu tRNA}
2331595	2331671	+	77	83591340	Rru_AR0038	-	^{16 Met tRNA}
2412007	2412083	-	77	83591340	Rru_AR0039	-	^{09 His tRNA}
2560697	2560938	+	242	83591340	Rru_AR0040	-	tmRNA, 10Sa RNA
2731721	2731797	-	77	83591340	Rru_AR0041	-	^{16 Met tRNA}
2731893	2732007	-	115	83591340	Rru_AR0042	-	5S ribosomal RNA
2732127	2734884	-	2758	83591340	Rru_AR0043	-	23S ribosomal RNA
2735247	2735322	-	76	83591340	Rru_AR0044	-	^{02 Ala tRNA}
2735389	2735465	-	77	83591340	Rru_AR0045	-	^{14 Ile tRNA}
2735650	2737126	-	1477	83591340	Rru_AR0046	-	16S ribosomal RNA
2962229	2962303	-	75	83591340	Rru_AR0047	-	^{13 Val tRNA}
3125185	3125260	-	76	83591340	Rru_AR0048	-	^{20 Trp tRNA}
3126888	3126961	-	74	83591340	Rru_AR0049	-	^{01 Gly tRNA}
3126989	3127074	-	86	83591340	Rru_AR0050	-	^{18 Tyr tRNA}
3128216	3128291	+	76	83591340	Rru_AR0051	-	^{12 Thr tRNA}
3194938	3195013	-	76	83591340	Rru_AR0052	-	^{17 Phe tRNA}
3322206	3322281	-	76	83591340	Rru_AR0053	-	^{16 Met tRNA}
3378255	3378329	+	75	83591340	Rru_AR0054	-	^{12 Thr tRNA}
3378495	3378569	+	75	83591340	Rru_AR0055	-	^{12 Thr tRNA}
3379605	3379681	+	77	83591340	Rru_AR0056	-	^{06 Asp tRNA}
3399757	3399833	-	77	83591340	Rru_AR0057	-	^{03 Pro tRNA}
3491233	3491307	+	75	83591340	Rru_AR0058	-	^{13 Val tRNA}
3719917	3719990	-	74	83591340	Rru_AR0059	-	^{01 Gly tRNA}
3806944	3807058	-	115	83591340	Rru_AR0060	-	5S ribosomal RNA
3807175	3809932	-	2758	83591340	Rru_AR0061	-	23S ribosomal RNA
3810295	3810370	-	76	83591340	Rru_AR0062	-	^{02 Ala tRNA}
3810437	3810513	-	77	83591340	Rru_AR0063	-	^{14 Ile tRNA}
3810698	3812174	-	1477	83591340	Rru_AR0064	-	16S ribosomal RNA
3825931	3826007	-	77	83591340	Rru_AR0065	-	^{11 Arg tRNA}
3998595	3998694	-	100	83591340	Rru_AR0066	-	SRP RNA, 4.5S RNA
4023191	4023277	-	87	83591340	Rru_AR0067	-	^{15 Leu tRNA}
4059305	4059380	+	76	83591340	Rru_AR0068	-	^{02 Ala tRNA}
4108039	4108113	-	75	83591340	Rru_AR0069	-	^{12 Thr tRNA}
4262308	4262382	+	75	83591340	Rru_AR0070	-	^{01 Gly tRNA}