Геном прокариот/Материалы:NC 007677

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007677            3551823 bp    DNA     circular BCT 30-MAR-2006
   DEFINITION  Salinibacter ruber DSM 13855, complete genome.
   ACCESSION   NC_007677
   VERSION     NC_007677.1  GI:83814055
   KEYWORDS    .
   SOURCE      Salinibacter ruber DSM 13855
     ORGANISM  Salinibacter ruber DSM 13855
               Bacteria; Bacteroidetes; Sphingobacteria; Sphingobacteriales;
               Sphingobacteriales genera incertae sedis; Salinibacter.
   REFERENCE   1  (bases 1 to 3551823)
     AUTHORS   Mongodin,E.F., Nelson,K.E., Daugherty,S., Deboy,R.T., Wister,J.,
               Khouri,H., Weidman,J., Walsh,D.A., Papke,R.T., Sanchez Perez,G.,
               Sharma,A.K., Nesbo,C.L., Macleod,D., Bapteste,E., Doolittle,W.F.,
               Charlebois,R.L., Legault,B. and Rodriguez-Valera,F.
     TITLE     The genome of Salinibacter ruber: Convergence and gene exchange
               among hyperhalophilic bacteria and archaea
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 102 (50), 18147-18152 (2005)
      PUBMED   16330755
   REFERENCE   2  (bases 1 to 3551823)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (22-DEC-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3551823)
     AUTHORS   Mongodin,E.F., Nelson,K.E., Daugherty,S.C., DeBoy,R.T., Wister,J.,
               Khouri,H.M., Weidman,J., Walsh,D.A., Papke,R.T., Sanchez Perrez,G.,
               Sharma,A.K., Nesbo,C.L., MacLeod,D., Bapteste,E., Doolittle,W.F.,
               Charlebois,R.L., Legault,B. and Rodriguez-Valera,F.
     TITLE     Direct Submission
     JOURNAL   Submitted (10-NOV-2005) The Institute for Genomic Research, 9712
               Medical Center Dr, Rockville, MD 20850, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000159.
               COMPLETENESS: full length.
               Salinibacter ruber strain M31T DSM13855 was obtained from the DSMZ
               (German Collection of Microorganisms and Cell Cultures) culture
               collection at
               http://www.dsmz.de/microorganisms/html/strains/strain.dsm013855.htm
               l . The S. ruber growth medium is described at
               http://www.dsmz.de/microorganisms/html/media/medium000936.html
               (DSMZ medium 936).

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
22670	22743	+	74	83814055	SRU_0024	-	^{03 Pro tRNA}
23159	23232	+	74	83814055	SRU_0025	-	^{19 Cys tRNA}
30547	30638	-	92	83814055	SRU_0032	-	^{08 Ser tRNA}
49204	49277	-	74	83814055	SRU_0051	-	^{13 Val tRNA}
49371	49445	-	75	83814055	SRU_0052	-	^{01 Gly tRNA}
520184	520260	-	77	83814055	SRU_0379	-	^{16 Met tRNA}
674818	674894	+	77	83814055	SRU_0500	-	^{13 Val tRNA}
993196	993273	+	78	83814055	SRU_0782	-	^{11 Arg tRNA}
1038615	1038688	-	74	83814055	SRU_0816	-	^{05 Gln tRNA}
1099418	1099494	-	77	83814055	SRU_0856	-	^{16 Met tRNA}
1174276	1174368	+	93	83814055	SRU_0917	-	^{08 Ser tRNA}
1216255	1216327	+	73	83814055	SRU_0949	-	^{11 Arg tRNA}
1342564	1342640	+	77	83814055	SRU_1069	-	^{09 His tRNA}
1342677	1342754	+	78	83814055	SRU_1070	-	^{04 Glu tRNA}
1352109	1352181	+	73	83814055	SRU_1082	-	^{02 Ala tRNA}
1401828	1402196	-	369	83814055	SRU_1111	-	sRNA
1490273	1490345	+	73	83814055	SRU_1180	-	^{02 Ala tRNA}
1555130	1555203	+	74	83814055	SRU_1238	-	^{11 Arg tRNA}
1852407	1852483	+	77	83814055	SRU_1485	-	^{10 Lys tRNA}
1894048	1894121	-	74	83814055	SRU_1522	-	^{03 Pro tRNA}
1922925	1923016	-	92	83814055	SRU_1543	-	^{08 Ser tRNA}
2003871	2003946	+	76	83814055	SRU_1610	-	^{17 Phe tRNA}
2049656	2049731	-	76	83814055	SRU_1649	-	^{12 Thr tRNA}
2126357	2126430	+	74	83814055	SRU_1717	-	^{11 Arg tRNA}
2181297	2181372	-	76	83814055	SRU_1765	-	^{20 Trp tRNA}
2247305	2247376	-	72	83814055	SRU_1813	-	^{16 Met tRNA}
2247492	2247566	-	75	83814055	SRU_1814	-	^{12 Thr tRNA}
2247586	2247657	-	72	83814055	SRU_1815	-	^{01 Gly tRNA}
2247719	2247804	-	86	83814055	SRU_1816	-	^{18 Tyr tRNA}
2271497	2271572	-	76	83814055	SRU_1836	-	^{01 Gly tRNA}
2325181	2325269	+	89	83814055	SRU_1883	-	^{15 Leu tRNA}
2342889	2342963	-	75	83814055	SRU_1897	-	^{06 Asp tRNA}
2460376	2460463	+	88	83814055	SRU_1989	-	^{15 Leu tRNA}
2517508	2517592	-	85	83814055	SRU_2033	-	^{15 Leu tRNA}
2520028	2520102	+	75	83814055	SRU_2035	-	^{07 Asn tRNA}
2865704	2865779	-	76	83814055	SRU_2300	-	^{05 Gln tRNA}
2877352	2877425	+	74	83814055	SRU_2310	-	^{10 Lys tRNA}
2877516	2877604	+	89	83814055	SRU_2311	-	^{15 Leu tRNA}
2958346	2958422	-	77	83814055	SRU_2379	-	^{03 Pro tRNA}
3075011	3075083	-	73	83814055	SRU_2472	-	^{12 Thr tRNA}
3313684	3313756	-	73	83814055	SRU_2675	-	^{04 Glu tRNA}
3324764	3324873	-	110	83814055	SRU_2687	-	5S ribosomal RNA
3325001	3327939	-	2939	83814055	SRU_2688	-	23S ribosomal RNA
3328157	3328232	-	76	83814055	SRU_2689	-	^{02 Ala tRNA}
3328246	3328320	-	75	83814055	SRU_2690	-	^{14 Ile tRNA}
3328508	3330049	-	1542	83814055	SRU_2691	-	16S ribosomal RNA
3458760	3458833	+	74	83814055	SRU_2801	-	^{13 Val tRNA}
3536874	3536960	-	87	83814055	SRU_2857	-	^{08 Ser tRNA}