Геном прокариот/Материалы:NC 007760

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007760            5013479 bp    DNA     circular BCT 31-MAR-2006
   DEFINITION  Anaeromyxobacter dehalogenans 2CP-C, complete genome.
   ACCESSION   NC_007760
   VERSION     NC_007760.1  GI:86156430
   KEYWORDS    .
   SOURCE      Anaeromyxobacter dehalogenans 2CP-C
     ORGANISM  Anaeromyxobacter dehalogenans 2CP-C
               Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales;
               Cystobacterineae; Myxococcaceae; Anaeromyxobacter.
   REFERENCE   1  (bases 1 to 5013479)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D.,
               Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F.,
               Land,M., Kyrpides,N., Anderson,I., Sanford,R.A., Ritalahti,K.M.,
               Thomas,H.S., Kirby,J.R., Zhulin,I.B., Loeffler,F.E. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Anaeromyxobacter dehalogenans 2CP-C
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5013479)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (30-JAN-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5013479)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D.,
               Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F.,
               Land,M., Kyrpides,N., Anderson,I., Sanford,R.A., Ritalahti,K.M.,
               Thomas,H.S., Kirby,J.R., Zhulin,I.B., Loeffler,F.E. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (24-JAN-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000251.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Frank Loeffler
               (frank.loeffler@ce.gatech.edu)
               Contact: Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
7820	7893	+	74	86156430	Adeh_R0001	-	^{05 Gln tRNA}
20677	20749	+	73	86156430	Adeh_R0002	-	^{17 Phe tRNA}
415485	415560	-	76	86156430	Adeh_R0003	-	^{01 Gly tRNA}
657535	657611	-	77	86156430	Adeh_R0004	-	^{06 Asp tRNA}
657618	657692	-	75	86156430	Adeh_R0005	-	^{13 Val tRNA}
684121	684204	-	84	86156430	Adeh_R0006	-	^{15 Leu tRNA}
837154	837226	+	73	86156430	Adeh_R0007	-	^{16 Met tRNA}
1026365	1026440	-	76	86156430	Adeh_R0008	-	^{02 Ala tRNA}
1196871	1196944	-	74	86156430	Adeh_R0009	-	^{03 Pro tRNA}
1331625	1331696	+	72	86156430	Adeh_R0010	-	^{19 Cys tRNA}
1361322	1362863	+	1542	86156430	Adeh_R0011	-	16S ribosomal RNA
1363057	1363134	+	78	86156430	Adeh_R0012	-	^{14 Ile tRNA}
1363154	1363229	+	76	86156430	Adeh_R0013	-	^{02 Ala tRNA}
1363429	1366413	+	2985	86156430	Adeh_R0014	-	23S ribosomal RNA
1366555	1366671	+	117	86156430	Adeh_R0015	-	5S ribosomal RNA
1406598	1406673	-	76	86156430	Adeh_R0016	-	^{07 Asn tRNA}
1684596	1684672	+	77	86156430	Adeh_R0017	-	^{11 Arg tRNA}
1758984	1759065	-	82	86156430	Adeh_R0018	-	^{15 Leu tRNA}
1786250	1786333	-	84	86156430	Adeh_R0019	-	^{15 Leu tRNA}
1813945	1814017	+	73	86156430	Adeh_R0020	-	^{12 Thr tRNA}
1814064	1814146	+	83	86156430	Adeh_R0021	-	^{18 Tyr tRNA}
1814211	1814286	+	76	86156430	Adeh_R0022	-	^{01 Gly tRNA}
1814309	1814381	+	73	86156430	Adeh_R0023	-	^{12 Thr tRNA}
1815825	1815900	+	76	86156430	Adeh_R0024	-	^{20 Trp tRNA}
1996880	1996955	+	76	86156430	Adeh_R0025	-	^{12 Thr tRNA}
2058807	2058878	-	72	86156430	Adeh_R0026	-	^{13 Val tRNA}
2097560	2097633	+	74	86156430	Adeh_R0027	-	^{16 Met tRNA}
2130853	2130947	+	95	86156430	Adeh_R0028	-	Sec tRNA
2222961	2223032	-	72	86156430	Adeh_R0029	-	^{13 Val tRNA}
2638334	2638410	-	77	86156430	Adeh_R0030	-	^{16 Met tRNA}
2756510	2756585	-	76	86156430	Adeh_R0031	-	^{02 Ala tRNA}
2936679	2936753	-	75	86156430	Adeh_R0032	-	^{04 Glu tRNA}
2936814	2936887	-	74	86156430	Adeh_R0033	-	^{05 Gln tRNA}
2943690	2943806	-	117	86156430	Adeh_R0034	-	5S ribosomal RNA
2943948	2946932	-	2985	86156430	Adeh_R0035	-	23S ribosomal RNA
2947132	2947207	-	76	86156430	Adeh_R0036	-	^{02 Ala tRNA}
2947227	2947304	-	78	86156430	Adeh_R0037	-	^{14 Ile tRNA}
2947498	2949039	-	1542	86156430	Adeh_R0038	-	16S ribosomal RNA
3011270	3011341	-	72	86156430	Adeh_R0039	-	^{10 Lys tRNA}
3023662	3023734	+	73	86156430	Adeh_R0040	-	^{04 Glu tRNA}
3115944	3116017	+	74	86156430	Adeh_R0041	-	^{11 Arg tRNA}
3759848	3759921	-	74	86156430	Adeh_R0042	-	^{03 Pro tRNA}
3772910	3772997	+	88	86156430	Adeh_R0043	-	^{15 Leu tRNA}
3863438	3863519	-	82	86156430	Adeh_R0044	-	^{15 Leu tRNA}
3867975	3868047	-	73	86156430	Adeh_R0045	-	^{10 Lys tRNA}
3868163	3868236	-	74	86156430	Adeh_R0046	-	^{11 Arg tRNA}
3868263	3868337	-	75	86156430	Adeh_R0047	-	^{09 His tRNA}
3868356	3868429	-	74	86156430	Adeh_R0048	-	^{11 Arg tRNA}
3868471	3868544	-	74	86156430	Adeh_R0049	-	^{03 Pro tRNA}
3980145	3980357	+	213	86156430	Adeh_R0050	-
4088991	4089065	-	75	86156430	Adeh_R0051	-	^{01 Gly tRNA}
4138082	4138201	-	120	86156430	Adeh_R0052	-	RNA component of RNaseP
4166364	4166475	-	112	86156430	Adeh_R0053	-	SRP RNA; RNA component of signal recognition particle
4166537	4166626	-	90	86156430	Adeh_R0054	-	^{08 Ser tRNA}
4166905	4166995	-	91	86156430	Adeh_R0055	-	^{08 Ser tRNA}
4428761	4428850	+	90	86156430	Adeh_R0056	-	^{08 Ser tRNA}
4428878	4428969	+	92	86156430	Adeh_R0057	-	^{08 Ser tRNA}
4429043	4429119	+	77	86156430	Adeh_R0058	-	^{11 Arg tRNA}