Геном прокариот/Материалы:NC 007908

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007908            4712337 bp    DNA     circular BCT 18-MAY-2006
   DEFINITION  Rhodoferax ferrireducens T118, complete genome.
   ACCESSION   NC_007908
   VERSION     NC_007908.1  GI:89898822
   KEYWORDS    .
   SOURCE      Rhodoferax ferrireducens T118
     ORGANISM  Rhodoferax ferrireducens T118
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Comamonadaceae; Rhodoferax.
   REFERENCE   1  (bases 1 to 4712337)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D.,
               Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F.,
               Land,M., Kyrpides,N., Ivanova,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome of Rhodoferax ferrireducens DSM
               15236
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4712337)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (16-MAR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4712337)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D.,
               Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F.,
               Land,M., Kyrpides,N., Ivanova,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (27-FEB-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000267.
               URL -- http://www.jgi.doe.gov
               Source DNA available from Derek Lovley (dlovley@microbio.umass.edu)
               Bacteria available from DSMZ: DSM 15236
               Contacts: Derek Lovley (dlovley@microbio.umass.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
207459	207534	+	76	89898822	Rfer_R0001	-	^{11 Arg tRNA}
378824	378899	-	76	89898822	Rfer_R0002	-	^{02 Ala tRNA}
659339	659412	+	74	89898822	Rfer_R0003	-	^{01 Gly tRNA}
1361114	1361190	-	77	89898822	Rfer_R0004	-	^{03 Pro tRNA}
1447387	1447463	+	77	89898822	Rfer_R0005	-	^{03 Pro tRNA}
1457493	1457585	+	93	89898822	Rfer_R0006	-	^{08 Ser tRNA}
1524587	1524674	-	88	89898822	Rfer_R0007	-	^{08 Ser tRNA}
1564522	1564597	-	76	89898822	Rfer_R0008	-	^{07 Asn tRNA}
1566744	1566845	-	102	89898822	Rfer_R0009	-	SRP RNA; RNA component of signal recognition particle
1587794	1587870	+	77	89898822	Rfer_R0010	-	^{11 Arg tRNA}
1606605	1606689	+	85	89898822	Rfer_R0011	-	^{15 Leu tRNA}
1675287	1675373	+	87	89898822	Rfer_R0012	-	^{15 Leu tRNA}
1681424	1681499	+	76	89898822	Rfer_R0013	-	^{01 Gly tRNA}
1681552	1681625	+	74	89898822	Rfer_R0014	-	^{19 Cys tRNA}
1681638	1681730	+	93	89898822	Rfer_R0015	-	^{15 Leu tRNA}
1701944	1702020	-	77	89898822	Rfer_R0016	-	^{16 Met tRNA}
1728628	1728702	+	75	89898822	Rfer_R0017	-	^{11 Arg tRNA}
1791571	1791647	+	77	89898822	Rfer_R0018	-	^{05 Gln tRNA}
1837798	1837900	+	103	89898822	Rfer_R0019	-
2121364	2121448	-	85	89898822	Rfer_R0020	-	^{15 Leu tRNA}
2296385	2296474	+	90	89898822	Rfer_R0021	-	^{08 Ser tRNA}
2381770	2381844	+	75	89898822	Rfer_R0022	-	^{13 Val tRNA}
2462673	2462748	+	76	89898822	Rfer_R0023	-	^{13 Val tRNA}
2464779	2464854	+	76	89898822	Rfer_R0024	-	^{09 His tRNA}
2583007	2583083	+	77	89898822	Rfer_R0025	-	^{03 Pro tRNA}
2619696	2619780	+	85	89898822	Rfer_R0026	-	^{15 Leu tRNA}
2702935	2703011	-	77	89898822	Rfer_R0027	-	^{13 Val tRNA}
2710968	2711076	+	109	89898822	Rfer_R0028	-
2718676	2718770	-	95	89898822	Rfer_R0029	-
2951325	2951401	-	77	89898822	Rfer_R0030	-	^{06 Asp tRNA}
2951495	2951570	-	76	89898822	Rfer_R0031	-	^{04 Glu tRNA}
2951629	2951704	-	76	89898822	Rfer_R0032	-	^{02 Ala tRNA}
2977648	2977723	+	76	89898822	Rfer_R0033	-	^{12 Thr tRNA}
3114440	3114516	-	77	89898822	Rfer_R0034	-	^{11 Arg tRNA}
3122337	3122412	+	76	89898822	Rfer_R0035	-	^{10 Lys tRNA}
3129592	3129947	+	356	89898822	Rfer_R0036	-	tmRNA
3275036	3275111	+	76	89898822	Rfer_R0037	-	^{12 Thr tRNA}
3329631	3329729	+	99	89898822	Rfer_R0038	-
3329757	3329892	+	136	89898822	Rfer_R0039	-
3355003	3355078	+	76	89898822	Rfer_R0040	-	^{10 Lys tRNA}
3591461	3591548	+	88	89898822	Rfer_R0041	-	^{08 Ser tRNA}
3599151	3599248	-	98	89898822	Rfer_R0042	-
3850851	3851131	-	281	89898822	Rfer_R0043	-	RNA component of RNaseP
3992057	3992132	-	76	89898822	Rfer_R0044	-	^{17 Phe tRNA}
4009554	4009629	-	76	89898822	Rfer_R0045	-	^{20 Trp tRNA}
4010877	4010951	-	75	89898822	Rfer_R0046	-	^{12 Thr tRNA}
4011013	4011086	-	74	89898822	Rfer_R0047	-	^{01 Gly tRNA}
4011175	4011260	-	86	89898822	Rfer_R0048	-	^{18 Tyr tRNA}
4108877	4108989	-	113	89898822	Rfer_R0049	-	5S ribosomal RNA
4109136	4112015	-	2880	89898822	Rfer_R0050	-	23S ribosomal RNA
4112364	4112439	-	76	89898822	Rfer_R0051	-	^{02 Ala tRNA}
4112466	4112542	-	77	89898822	Rfer_R0052	-	^{14 Ile tRNA}
4112640	4114170	-	1531	89898822	Rfer_R0053	-	16S ribosomal RNA
4114521	4114633	-	113	89898822	Rfer_R0054	-	5S ribosomal RNA
4114780	4117659	-	2880	89898822	Rfer_R0055	-	23S ribosomal RNA
4118008	4118083	-	76	89898822	Rfer_R0056	-	^{02 Ala tRNA}
4118110	4118186	-	77	89898822	Rfer_R0057	-	^{14 Ile tRNA}
4118284	4119814	-	1531	89898822	Rfer_R0058	-	16S ribosomal RNA
4691645	4691721	-	77	89898822	Rfer_R0059	-	^{16 Met tRNA}