Геном прокариот/Материалы:NC 007912

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007912            5057531 bp    DNA     circular BCT 03-APR-2006
   DEFINITION  Saccharophagus degradans 2-40, complete genome.
   ACCESSION   NC_007912
   VERSION     NC_007912.1  GI:90019649
   KEYWORDS    .
   SOURCE      Saccharophagus degradans 2-40
     ORGANISM  Saccharophagus degradans 2-40
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Alteromonadaceae; Saccharophagus.
   REFERENCE   1  (bases 1 to 5057531)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J.,
               Larimer,F., Land,M., Kyrpides,N., Lykidis,A., Richardson,P. and
               Weiner,R.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Saccharophagus degradans 2-40
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5057531)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (20-MAR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5057531)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J.,
               Larimer,F., Land,M., Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000282.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2662192
               Source DNA and bacteria available from Ronald Weiner
               (rw19@umail.umd.edu)
               Contacts: Ronald Wiener (rw19@umail.umd.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
231625	231701	-	77	90019649	Sde_R0001	-	^{11 Arg tRNA}
337690	337765	+	76	90019649	Sde_R0002	-	^{07 Asn tRNA}
339669	339741	+	73	90019649	Sde_R0003	-	^{09 His tRNA}
420943	421018	-	76	90019649	Sde_R0004	-	^{17 Phe tRNA}
925996	926072	-	77	90019649	Sde_R0005	-	^{16 Met tRNA}
1090732	1091036	+	305	90019649	Sde_R0006	-	RNA component of RNaseP
1183544	1183619	+	76	90019649	Sde_R0007	-	^{12 Thr tRNA}
1183659	1183742	+	84	90019649	Sde_R0008	-	^{18 Tyr tRNA}
1183911	1183984	+	74	90019649	Sde_R0009	-	^{01 Gly tRNA}
1184012	1184087	+	76	90019649	Sde_R0010	-	^{12 Thr tRNA}
1184174	1184249	+	76	90019649	Sde_R0011	-	^{20 Trp tRNA}
1353012	1353098	-	87	90019649	Sde_R0012	-	^{15 Leu tRNA}
1409844	1411338	+	1495	90019649	Sde_R0013	-	16S ribosomal RNA
1414219	1417090	+	2872	90019649	Sde_R0014	-	23S ribosomal RNA
1417439	1417553	+	115	90019649	Sde_R0015	-	5S ribosomal RNA
1504707	1504782	+	76	90019649	Sde_R0016	-	^{04 Glu tRNA}
1504784	1504858	+	75	90019649	Sde_R0017	-	^{01 Gly tRNA}
1511552	1511639	+	88	90019649	Sde_R0018	-	^{08 Ser tRNA}
1692132	1692221	+	90	90019649	Sde_R0019	-	^{08 Ser tRNA}
1692957	1693033	+	77	90019649	Sde_R0020	-	^{11 Arg tRNA}
1729370	1729479	+	110	90019649	Sde_R0021	-	SRP RNA; RNA component of signal recognitionparticle
1820547	1820633	-	87	90019649	Sde_R0022	-	^{15 Leu tRNA}
1929232	1929307	+	76	90019649	Sde_R0023	-	^{02 Ala tRNA}
2024147	2024222	-	76	90019649	Sde_R0024	-	^{07 Asn tRNA}
2024337	2024413	-	77	90019649	Sde_R0025	-	^{13 Val tRNA}
2035241	2035317	+	77	90019649	Sde_R0026	-	^{03 Pro tRNA}
2065737	2065821	+	85	90019649	Sde_R0027	-	^{15 Leu tRNA}
2080810	2080897	-	88	90019649	Sde_R0028	-	^{08 Ser tRNA}
2203011	2203086	+	76	90019649	Sde_R0029	-	^{13 Val tRNA}
2203134	2203210	+	77	90019649	Sde_R0030	-	^{06 Asp tRNA}
2367920	2367996	-	77	90019649	Sde_R0031	-	^{06 Asp tRNA}
2368044	2368119	-	76	90019649	Sde_R0032	-	^{13 Val tRNA}
2422138	2422214	+	77	90019649	Sde_R0033	-	^{03 Pro tRNA}
2422299	2422375	+	77	90019649	Sde_R0034	-	^{11 Arg tRNA}
2422402	2422477	+	76	90019649	Sde_R0035	-	^{09 His tRNA}
2631692	2631778	-	87	90019649	Sde_R0036	-	^{15 Leu tRNA}
2631844	2631917	-	74	90019649	Sde_R0037	-	^{19 Cys tRNA}
2823562	2823638	+	77	90019649	Sde_R0038	-	^{11 Arg tRNA}
3198142	3198217	-	76	90019649	Sde_R0039	-	^{10 Lys tRNA}
3198423	3198498	-	76	90019649	Sde_R0040	-	^{10 Lys tRNA}
3209322	3209436	-	115	90019649	Sde_R0041	-	5S ribosomal RNA
3209807	3212678	-	2872	90019649	Sde_R0042	-	23S ribosomal RNA
3213358	3214891	-	1534	90019649	Sde_R0043	-	16S ribosomal RNA
3213372	3213447	-	76	90019649	Sde_R0044	-	^{02 Ala tRNA}
3213458	3213534	-	77	90019649	Sde_R0045	-	^{14 Ile tRNA}
3439809	3439885	-	77	90019649	Sde_R0046	-	^{16 Met tRNA}
3443994	3444078	-	85	90019649	Sde_R0047	-	^{15 Leu tRNA}
3471683	3472071	+	389	90019649	Sde_R0048	-	tmRNA
4154930	4155004	+	75	90019649	Sde_R0049	-	^{05 Gln tRNA}
4158804	4158880	+	77	90019649	Sde_R0050	-	^{16 Met tRNA}