Геном прокариот/Материалы:NC 007947

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007947            2971517 bp    DNA     circular BCT 03-MAY-2007
   DEFINITION  Methylobacillus flagellatus KT, complete genome.
   ACCESSION   NC_007947
   VERSION     NC_007947.1  GI:91774356
   KEYWORDS    .
   SOURCE      Methylobacillus flagellatus KT
     ORGANISM  Methylobacillus flagellatus KT
               Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales;
               Methylophilaceae; Methylobacillus.
   REFERENCE   1  (bases 1 to 2971517)
     AUTHORS   Chistoserdova,L., Lapidus,A., Han,C., Goodwin,L., Saunders,L.,
               Brettin,T., Tapia,R., Gilna,P., Lucas,S., Richardson,P.M. and
               Lidstrom,M.E.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     The genome of Methylobacillus flagellatus, the molecular basis for
               obligate methylotrophy, and the polyphyletic origin of
               methylotrophy
     JOURNAL   (er) J. Bacteriol. (2007) In press
      PUBMED   17416667
   REFERENCE   2  (bases 1 to 2971517)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-APR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2971517)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Anderson,I. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000284.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3436091
               Source DNA and bacteria available from Mary Lidstrom
               (lidstrom@u.washington.edu)
               Contacts: Mary Lidstrom (lidstrom@u.washington.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
12183	12258	+	76	91774356	Mfla_R0001	-	^{04 Glu tRNA}
64111	65576	+	1466	91774356	Mfla_R0002	-	16S ribosomal RNA
65726	65802	+	77	91774356	Mfla_R0003	-	^{14 Ile tRNA}
65899	65974	+	76	91774356	Mfla_R0004	-	^{02 Ala tRNA}
66261	69144	+	2884	91774356	Mfla_R0005	-	23S ribosomal RNA
69291	69404	+	114	91774356	Mfla_R0006	-	5S ribosomal RNA
79967	80043	+	77	91774356	Mfla_R0007	-	^{03 Pro tRNA}
80072	80148	+	77	91774356	Mfla_R0008	-	^{11 Arg tRNA}
80180	80255	+	76	91774356	Mfla_R0009	-	^{09 His tRNA}
107330	107405	-	76	91774356	Mfla_R0010	-	^{17 Phe tRNA}
121288	121499	-	212	91774356	Mfla_R0011	-
134479	134699	-	221	91774356	Mfla_R0012	-
269603	269678	+	76	91774356	Mfla_R0013	-	^{12 Thr tRNA}
269738	269822	+	85	91774356	Mfla_R0014	-	^{18 Tyr tRNA}
269864	269939	+	76	91774356	Mfla_R0015	-	^{01 Gly tRNA}
269966	270040	+	75	91774356	Mfla_R0016	-	^{12 Thr tRNA}
271351	271426	+	76	91774356	Mfla_R0017	-	^{20 Trp tRNA}
430370	430454	+	85	91774356	Mfla_R0018	-	^{15 Leu tRNA}
480115	480191	-	77	91774356	Mfla_R0019	-	^{11 Arg tRNA}
544978	545053	+	76	91774356	Mfla_R0020	-	^{10 Lys tRNA}
590196	590272	-	77	91774356	Mfla_R0021	-	^{11 Arg tRNA}
590353	590446	-	94	91774356	Mfla_R0022	-	^{08 Ser tRNA}
701255	701331	-	77	91774356	Mfla_R0023	-	^{16 Met tRNA}
708543	708619	-	77	91774356	Mfla_R0024	-	^{05 Gln tRNA}
1181020	1181110	-	91	91774356	Mfla_R0025	-	^{08 Ser tRNA}
1198789	1199149	+	361	91774356	Mfla_R0026	-	tmRNA
1235852	1235927	+	76	91774356	Mfla_R0027	-	^{13 Val tRNA}
1235987	1236063	+	77	91774356	Mfla_R0028	-	^{06 Asp tRNA}
1247894	1247968	-	75	91774356	Mfla_R0029	-	^{11 Arg tRNA}
1286474	1286697	+	224	91774356	Mfla_R0030	-
1394309	1394394	-	86	91774356	Mfla_R0031	-	^{15 Leu tRNA}
1415387	1415476	+	90	91774356	Mfla_R0032	-	^{08 Ser tRNA}
1456183	1456294	-	112	91774356	Mfla_R0033	-
1498590	1498665	-	76	91774356	Mfla_R0034	-	^{04 Glu tRNA}
1498707	1498782	-	76	91774356	Mfla_R0035	-	^{02 Ala tRNA}
1520423	1520498	+	76	91774356	Mfla_R0036	-	^{13 Val tRNA}
1520548	1520624	+	77	91774356	Mfla_R0037	-	^{06 Asp tRNA}
1574678	1574765	-	88	91774356	Mfla_R0038	-	^{08 Ser tRNA}
1662861	1662936	+	76	91774356	Mfla_R0039	-	^{07 Asn tRNA}
1685091	1685191	+	101	91774356	Mfla_R0040	-	SRP RNA; RNA component of signal recognition particle
1741989	1742075	+	87	91774356	Mfla_R0041	-	^{15 Leu tRNA}
1742982	1743066	+	85	91774356	Mfla_R0042	-	^{15 Leu tRNA}
1921493	1921603	-	111	91774356	Mfla_R0043	-
1921794	1921897	+	104	91774356	Mfla_R0044	-
1943494	1943569	-	76	91774356	Mfla_R0045	-	^{01 Gly tRNA}
1943596	1943669	-	74	91774356	Mfla_R0046	-	^{19 Cys tRNA}
1943747	1943822	-	76	91774356	Mfla_R0047	-	^{01 Gly tRNA}
2064401	2064476	+	76	91774356	Mfla_R0048	-	^{10 Lys tRNA}
2130253	2130351	+	99	91774356	Mfla_R0049	-
2135008	2135084	-	77	91774356	Mfla_R0050	-	^{03 Pro tRNA}
2173136	2173212	-	77	91774356	Mfla_R0051	-	^{13 Val tRNA}
2203957	2204041	-	85	91774356	Mfla_R0052	-	^{15 Leu tRNA}
2229585	2229698	-	114	91774356	Mfla_R0053	-	5S ribosomal RNA
2229845	2232728	-	2884	91774356	Mfla_R0054	-	23S ribosomal RNA
2233015	2233090	-	76	91774356	Mfla_R0055	-	^{02 Ala tRNA}
2233187	2233263	-	77	91774356	Mfla_R0056	-	^{14 Ile tRNA}
2233413	2234878	-	1466	91774356	Mfla_R0057	-	16S ribosomal RNA
2235291	2235367	-	77	91774356	Mfla_R0058	-	^{16 Met tRNA}
2433350	2433600	-	251	91774356	Mfla_R0059	-	RNA component of RNaseP
2479094	2479172	-	79	91774356	Mfla_R0060	-	^{16 Met tRNA}
2531581	2531656	-	76	91774356	Mfla_R0061	-	^{12 Thr tRNA}
2714533	2714643	-	111	91774356	Mfla_R0062	-
2861839	2861912	+	74	91774356	Mfla_R0063	-	^{01 Gly tRNA}