Геном прокариот/Материалы:NC 007948

(перенаправлено с «Материалы:NC 007948»)
Базовый уровень статей

Выделить только проверенную информацию

Создать черновик

   LOCUS       NC_007948            5200264 bp    DNA     circular BCT 13-APR-2006
   DEFINITION  Polaromonas sp. JS666, complete genome.
   ACCESSION   NC_007948
   VERSION     NC_007948.1  GI:91785913
   KEYWORDS    .
   SOURCE      Polaromonas sp. JS666
     ORGANISM  Polaromonas sp. JS666
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Comamonadaceae; Polaromonas.
   REFERENCE   1  (bases 1 to 5200264)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Munk,A.C., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Anderson,I. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Polaromonas sp. JS666
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5200264)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-APR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5200264)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Munk,A.C., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Anderson,I. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (03-APR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000316.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634502
               Source DNA and bacteria available from James Gossett
               (jmg18@cornell.edu)
               Contacts: James Gossett (jmg18@cornell.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК править

Начало Конец Направление Длина PID Ген COG Комментарий
39480 39591 + 112 91785913 Bpro_R0051 -
303538 303613 - 76 91785913 Bpro_R0001 - 02 Ala tRNA
389805 389880 + 76 91785913 Bpro_R0002 - 11 Arg tRNA
512117 512193 + 77 91785913 Bpro_R0003 - 16 Met tRNA
847808 847883 + 76 91785913 Bpro_R0004 - 12 Thr tRNA
863111 863187 + 77 91785913 Bpro_R0005 - 03 Pro tRNA
977497 977584 + 88 91785913 Bpro_R0006 - 08 Ser tRNA
1076916 1077193 + 278 91785913 Bpro_R0007 - RNA component of RNaseP
1159489 1159565 - 77 91785913 Bpro_R0008 - 16 Met tRNA
1261385 1261459 - 75 91785913 Bpro_R0009 - 11 Arg tRNA
1336133 1336209 - 77 91785913 Bpro_R0010 - 05 Gln tRNA
1348329 1348405 + 77 91785913 Bpro_R0011 - 16 Met tRNA
1372288 1372364 + 77 91785913 Bpro_R0012 - 11 Arg tRNA
1385022 1385111 - 90 91785913 Bpro_R0013 - 08 Ser tRNA
1522987 1523056 + 70 91785913 Bpro_R0014 - 14 Ile tRNA
1635757 1635832 - 76 91785913 Bpro_R0015 - 12 Thr tRNA
1662458 1662533 + 76 91785913 Bpro_R0016 - 02 Ala tRNA
1662620 1662695 + 76 91785913 Bpro_R0017 - 04 Glu tRNA
1662795 1662871 + 77 91785913 Bpro_R0018 - 06 Asp tRNA
1861517 1861900 + 384 91785913 Bpro_R0019 - tmRNA
1930584 1930680 - 97 91785913 Bpro_R0055 -
1930708 1930819 - 112 91785913 Bpro_R0056 -
2021019 2021092 - 74 91785913 Bpro_R0020 - 01 Gly tRNA
2056369 2056444 + 76 91785913 Bpro_R0021 - 10 Lys tRNA
2102385 2102471 + 87 91785913 Bpro_R0022 - 15 Leu tRNA
2108684 2108759 + 76 91785913 Bpro_R0023 - 01 Gly tRNA
2108864 2108937 + 74 91785913 Bpro_R0024 - 19 Cys tRNA
2109011 2109103 + 93 91785913 Bpro_R0025 - 15 Leu tRNA
2199178 2199254 + 77 91785913 Bpro_R0026 - 03 Pro tRNA
2280069 2280143 + 75 91785913 Bpro_R0027 - 13 Val tRNA
2360018 2360119 - 102 91785913 Bpro_R0028 - SRP RNA; RNA component of signal recognition particle
2422284 2422359 + 76 91785913 Bpro_R0029 - 07 Asn tRNA
2510476 2510565 - 90 91785913 Bpro_R0030 - 08 Ser tRNA
2844707 2844791 + 85 91785913 Bpro_R0031 - 15 Leu tRNA
2847278 2847354 - 77 91785913 Bpro_R0032 - 13 Val tRNA
2929075 2929365 - 291 91785913 Bpro_R0052 -
3015144 3015236 - 93 91785913 Bpro_R0033 - 08 Ser tRNA
3136016 3136092 - 77 91785913 Bpro_R0034 - 11 Arg tRNA
3136151 3136227 - 77 91785913 Bpro_R0035 - 03 Pro tRNA
3229072 3229147 - 76 91785913 Bpro_R0036 - 09 His tRNA
3231206 3231281 - 76 91785913 Bpro_R0037 - 13 Val tRNA
3447218 3447302 - 85 91785913 Bpro_R0038 - 15 Leu tRNA
3934264 3934348 + 85 91785913 Bpro_R0039 - 15 Leu tRNA
4407321 4407421 + 101 91785913 Bpro_R0054 -
4407423 4407538 + 116 91785913 Bpro_R0053 -
4448265 4448377 - 113 91785913 Bpro_R0040 - 5S ribosomal RNA
4448521 4451403 - 2883 91785913 Bpro_R0041 - 23S ribosomal RNA
4451713 4451788 - 76 91785913 Bpro_R0042 - 02 Ala tRNA
4451816 4451892 - 77 91785913 Bpro_R0043 - 14 Ile tRNA
4452033 4453560 - 1528 91785913 Bpro_R0044 - 16S ribosomal RNA
4561988 4562063 - 76 91785913 Bpro_R0045 - 01 Gly tRNA
4680697 4680772 - 76 91785913 Bpro_R0046 - 17 Phe tRNA
4702455 4702530 - 76 91785913 Bpro_R0047 - 20 Trp tRNA
4703820 4703894 - 75 91785913 Bpro_R0048 - 12 Thr tRNA
4703962 4704035 - 74 91785913 Bpro_R0049 - 01 Gly tRNA
4704149 4704234 - 86 91785913 Bpro_R0050 - 18 Tyr tRNA
5188267 5188343 - 77 91785913 Bpro_R0060 -