Геном прокариот/Материалы:NC 007952

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007952            3363523 bp    DNA     circular BCT 12-DEC-2006
   DEFINITION  Burkholderia xenovorans LB400 chromosome 2, complete sequence.
   ACCESSION   NC_007952
   VERSION     NC_007952.1  GI:91777110
   KEYWORDS    .
   SOURCE      Burkholderia xenovorans LB400
     ORGANISM  Burkholderia xenovorans LB400
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Burkholderiaceae; Burkholderia.
   REFERENCE   1  (bases 1 to 3363523)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome 2 of Burkholderia xenovorans LB400
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3363523)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-APR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3363523)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (13-MAR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000271.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2351477
               Source DNA and bacteria available from Jim Tiedje
               (tiedjej@pilot.msu.edu)
               Contacts: Jim Tiedje (tiedjej@pilot.msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
539551	541040	+	1490	91777110	Bxe_BR0001	-	16S ribosomal RNA
541113	541189	+	77	91777110	Bxe_BR0002	-	^{14 Ile tRNA}
541271	541346	+	76	91777110	Bxe_BR0003	-	^{02 Ala tRNA}
541641	544522	+	2882	91777110	Bxe_BR0004	-	23S ribosomal RNA
544698	544811	+	114	91777110	Bxe_BR0005	-	5S ribosomal RNA
554750	554826	+	77	91777110	Bxe_BR0006	-	^{13 Val tRNA}
570311	570406	+	96	91777110	Bxe_BR0086	-	Sec tRNA
1300717	1302206	+	1490	91777110	Bxe_BR0007	-	16S ribosomal RNA
1302278	1302354	+	77	91777110	Bxe_BR0008	-	^{14 Ile tRNA}
1302436	1302511	+	76	91777110	Bxe_BR0009	-	^{02 Ala tRNA}
1302806	1305687	+	2882	91777110	Bxe_BR0010	-	23S ribosomal RNA
1305862	1305975	+	114	91777110	Bxe_BR0011	-	5S ribosomal RNA
1556131	1557620	+	1490	91777110	Bxe_BR0012	-	16S ribosomal RNA
1557693	1557769	+	77	91777110	Bxe_BR0013	-	^{14 Ile tRNA}
1557851	1557926	+	76	91777110	Bxe_BR0014	-	^{02 Ala tRNA}
1558221	1561102	+	2882	91777110	Bxe_BR0015	-	23S ribosomal RNA
1561278	1561391	+	114	91777110	Bxe_BR0016	-	5S ribosomal RNA