Материалы:NC 007973

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007973            3928089 bp    DNA     circular BCT 19-DEC-2006
   DEFINITION  Ralstonia metallidurans CH34 chromosome 1, complete sequence.
   ACCESSION   NC_007973
   VERSION     NC_007973.1  GI:94308945
   KEYWORDS    .
   SOURCE      Ralstonia metallidurans CH34
     ORGANISM  Ralstonia metallidurans CH34
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Burkholderiaceae; Cupriavidus.
   REFERENCE   1  (bases 1 to 3928089)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Martinez,M.,
               Goltsman,E., Pitluck,S., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Kim,E., Mergeay,M., Benotmane,M.A.,
               Vallaeys,T., Michaux,A., Monchy,S., Dunn,J., McCorkle,S.,
               Taghavi,S., van der Lelie,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome 1 of Ralstonia metallidurans CH34
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3928089)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (27-APR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3928089)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Martinez,M.,
               Goltsman,E., Pitluck,S., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Kim,E., Mergeay,M., Benotmane,M.A.,
               Vallaeys,T., Michaux,A., Monchy,S., Dunn,J., McCorkle,S.,
               Taghavi,S., van der Lelie,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (18-APR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000352.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2351356
               Source DNA and bacteria available from John J. Dunn (jdunn@bnl.gov)
               Contacts: John J. Dunn (jdunn@bnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
169782	169883	+	102	94308945	Rmet_R0001	-
204307	204381	+	75	94308945	Rmet_R0002	-	^{19 Cys tRNA}
305620	305696	-	77	94308945	Rmet_R0003	-	^{05 Gln tRNA}
435726	436006	+	281	94308945	Rmet_R0004	-	RNA component of RNaseP
490489	490565	-	77	94308945	Rmet_R0005	-	^{16 Met tRNA}
768497	768586	+	90	94308945	Rmet_R0006	-	^{08 Ser tRNA}
785497	785856	-	360	94308945	Rmet_R0007	-	tmRNA
929831	929920	-	90	94308945	Rmet_R0008	-	^{08 Ser tRNA}
940981	941057	+	77	94308945	Rmet_R0009	-	^{11 Arg tRNA}
942032	942108	+	77	94308945	Rmet_R0010	-	^{16 Met tRNA}
955687	955762	-	76	94308945	Rmet_R0011	-	^{12 Thr tRNA}
971944	972115	-	172	94308945	Rmet_R0012	-
1012294	1012378	+	85	94308945	Rmet_R0013	-	^{15 Leu tRNA}
1183005	1183098	+	94	94308945	Rmet_R0014	-	^{08 Ser tRNA}
1269604	1269680	+	77	94308945	Rmet_R0015	-	^{13 Val tRNA}
1278235	1278311	+	77	94308945	Rmet_R0016	-	^{03 Pro tRNA}
1297980	1298055	-	76	94308945	Rmet_R0017	-	^{10 Lys tRNA}
1300792	1300867	-	76	94308945	Rmet_R0018	-	^{10 Lys tRNA}
1336450	1336525	-	76	94308945	Rmet_R0019	-	^{16 Met tRNA}
2046395	2046471	-	77	94308945	Rmet_R0020	-	^{06 Asp tRNA}
2046515	2046590	-	76	94308945	Rmet_R0021	-	^{13 Val tRNA}
2093378	2093464	-	87	94308945	Rmet_R0022	-	^{15 Leu tRNA}
2160684	2160759	-	76	94308945	Rmet_R0023	-	^{09 His tRNA}
2184912	2184987	-	76	94308945	Rmet_R0024	-	^{16 Met tRNA}
2273445	2273531	+	87	94308945	Rmet_R0025	-	^{15 Leu tRNA}
2315225	2315328	+	104	94308945	Rmet_R0026	-	SRP RNA; RNA component of signal recognition particle
2329479	2329555	-	77	94308945	Rmet_R0027	-	^{06 Asp tRNA}
2329622	2329697	-	76	94308945	Rmet_R0028	-	^{04 Glu tRNA}
2329807	2329882	-	76	94308945	Rmet_R0029	-	^{02 Ala tRNA}
2330033	2330109	-	77	94308945	Rmet_R0030	-	^{06 Asp tRNA}
2330176	2330251	-	76	94308945	Rmet_R0031	-	^{04 Glu tRNA}
2330259	2330334	-	76	94308945	Rmet_R0032	-	^{02 Ala tRNA}
2377926	2377999	-	74	94308945	Rmet_R0033	-	^{11 Arg tRNA}
2379877	2379953	+	77	94308945	Rmet_R0034	-	^{03 Pro tRNA}
2422155	2422229	+	75	94308945	Rmet_R0035	-	^{13 Val tRNA}
2483060	2483150	+	91	94308945	Rmet_R0036	-	^{08 Ser tRNA}
2504604	2504689	+	86	94308945	Rmet_R0037	-	^{15 Leu tRNA}
2508446	2508519	-	74	94308945	Rmet_R0038	-	^{19 Cys tRNA}
2618213	2618288	-	76	94308945	Rmet_R0039	-	^{01 Gly tRNA}
2618372	2618447	-	76	94308945	Rmet_R0040	-	^{01 Gly tRNA}
2664646	2664721	+	76	94308945	Rmet_R0041	-	^{07 Asn tRNA}
2786048	2786122	-	75	94308945	Rmet_R0042	-	^{11 Arg tRNA}
2792588	2792725	+	138	94308945	Rmet_R0043	-
2833665	2833743	-	79	94308945	Rmet_R0044	-	^{16 Met tRNA}
2904993	2905068	-	76	94308945	Rmet_R0045	-	^{10 Lys tRNA}
2937778	2937852	+	75	94308945	Rmet_R0046	-	^{01 Gly tRNA}
3037311	3037573	-	263	94308945	Rmet_R0047	-
3071451	3071535	+	85	94308945	Rmet_R0048	-	^{15 Leu tRNA}
3366865	3366941	+	77	94308945	Rmet_R0049	-	^{03 Pro tRNA}
3427573	3427686	-	114	94308945	Rmet_R0050	-	5S ribosomal RNA
3427866	3430683	-	2818	94308945	Rmet_R0051	-	23S ribosomal RNA
3430966	3431041	-	76	94308945	Rmet_R0052	-	^{02 Ala tRNA}
3431053	3431129	-	77	94308945	Rmet_R0053	-	^{14 Ile tRNA}
3431194	3432720	-	1527	94308945	Rmet_R0054	-	16S ribosomal RNA
3502848	3502923	-	76	94308945	Rmet_R0055	-	^{12 Thr tRNA}
3610792	3610867	-	76	94308945	Rmet_R0056	-	^{20 Trp tRNA}
3612186	3612260	-	75	94308945	Rmet_R0057	-	^{12 Thr tRNA}
3612298	3612371	-	74	94308945	Rmet_R0058	-	^{01 Gly tRNA}
3612422	3612507	-	86	94308945	Rmet_R0059	-	^{18 Tyr tRNA}
3612806	3612919	-	114	94308945	Rmet_R0060	-	5S ribosomal RNA
3613099	3615916	-	2818	94308945	Rmet_R0061	-	23S ribosomal RNA
3616199	3616274	-	76	94308945	Rmet_R0062	-	^{02 Ala tRNA}
3616286	3616362	-	77	94308945	Rmet_R0063	-	^{14 Ile tRNA}
3616427	3617953	-	1527	94308945	Rmet_R0064	-	16S ribosomal RNA
3697701	3697776	-	76	94308945	Rmet_R0065	-	^{02 Ala tRNA}
3751721	3751796	-	76	94308945	Rmet_R0066	-	^{11 Arg tRNA}
3761298	3761385	+	88	94308945	Rmet_R0067	-
3761407	3761526	+	120	94308945	Rmet_R0068	-
3859161	3859236	-	76	94308945	Rmet_R0069	-	^{17 Phe tRNA}