Геном прокариот/Материалы:NC 008009

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008009            5650368 bp    DNA     circular BCT 10-MAY-2006
   DEFINITION  Candidatus Koribacter versatilis Ellin345, complete genome.
   ACCESSION   NC_008009
   VERSION     NC_008009.1  GI:94967031
   KEYWORDS    .
   SOURCE      Candidatus Koribacter versatilis Ellin345
     ORGANISM  Candidatus Koribacter versatilis Ellin345
               Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae.
   REFERENCE   1  (bases 1 to 5650368)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Kiss,H., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Lykidis,A., Kuske,C., Janssen,P.H. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Acidobacteria bacterium Ellin345
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5650368)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (09-MAY-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5650368)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Kiss,H., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Lykidis,A., Kuske,C., Janssen,P.H. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (25-APR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000360.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000157
               Source DNA and bacteria available from Cheryl Kuske
               (kuske@lanl.gov)
               Contacts: Cheryl Kuske (kuske@lanl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
226249	226325	-	77	94967031	Acid345_R0001	-	^{11 Arg tRNA}
321964	322040	-	77	94967031	Acid345_R0002	-	^{03 Pro tRNA}
327098	327184	+	87	94967031	Acid345_R0003	-	^{15 Leu tRNA}
436855	436916	+	62	94967031	Acid345_R0004	-
478049	478137	+	89	94967031	Acid345_R0005	-	^{15 Leu tRNA}
623241	623317	+	77	94967031	Acid345_R0006	-	^{03 Pro tRNA}
782919	782994	+	76	94967031	Acid345_R0007	-	^{10 Lys tRNA}
965656	965730	+	75	94967031	Acid345_R0008	-	^{13 Val tRNA}
1015247	1015321	+	75	94967031	Acid345_R0009	-	^{01 Gly tRNA}
1015412	1015486	+	75	94967031	Acid345_R0010	-	^{19 Cys tRNA}
1319335	1319410	+	76	94967031	Acid345_R0011	-	^{17 Phe tRNA}
1343299	1343372	-	74	94967031	Acid345_R0012	-	^{05 Gln tRNA}
1411021	1411096	+	76	94967031	Acid345_R0013	-	^{12 Thr tRNA}
1549908	1550249	-	342	94967031	Acid345_R0014	-	RNA component of RNaseP
2183383	2183459	-	77	94967031	Acid345_R0015	-	^{11 Arg tRNA}
2275711	2275787	-	77	94967031	Acid345_R0016	-	^{11 Arg tRNA}
2284754	2284838	-	85	94967031	Acid345_R0017	-	^{15 Leu tRNA}
2308256	2308330	+	75	94967031	Acid345_R0018	-	^{07 Asn tRNA}
2354596	2354670	-	75	94967031	Acid345_R0019	-	^{01 Gly tRNA}
2379908	2379997	-	90	94967031	Acid345_R0020	-	^{08 Ser tRNA}
2416096	2416209	+	114	94967031	Acid345_R0021	-	SRP RNA; RNA component of signal recognition particle
2480985	2481062	-	78	94967031	Acid345_R0022	-	^{04 Glu tRNA}
2568155	2568230	+	76	94967031	Acid345_R0023	-	^{02 Ala tRNA}
2891224	2891308	+	85	94967031	Acid345_R0024	-	^{15 Leu tRNA}
3278034	3278109	+	76	94967031	Acid345_R0025	-	^{10 Lys tRNA}
3458746	3458821	-	76	94967031	Acid345_R0026	-	Xaa tRNA
3720631	3720719	-	89	94967031	Acid345_R0027	-	^{15 Leu tRNA}
3783475	3783551	+	77	94967031	Acid345_R0028	-	^{11 Arg tRNA}
3907637	3907713	-	77	94967031	Acid345_R0029	-	^{16 Met tRNA}
4130979	4131054	+	76	94967031	Acid345_R0030	-	^{16 Met tRNA}
4184267	4184328	+	62	94967031	Acid345_R0031	-
4447548	4447637	-	90	94967031	Acid345_R0032	-	^{08 Ser tRNA}
4551744	4551819	-	76	94967031	Acid345_R0033	-	^{02 Ala tRNA}
4614262	4614336	-	75	94967031	Acid345_R0034	-	^{04 Glu tRNA}
4616518	4616592	+	75	94967031	Acid345_R0035	-	^{09 His tRNA}
4689838	4689914	-	77	94967031	Acid345_R0036	-	^{03 Pro tRNA}
4748291	4748368	+	78	94967031	Acid345_R0037	-	^{13 Val tRNA}
4763124	4763200	-	77	94967031	Acid345_R0038	-	^{06 Asp tRNA}
4763226	4763302	-	77	94967031	Acid345_R0039	-	^{13 Val tRNA}
4776758	4776834	+	77	94967031	Acid345_R0040	-	^{11 Arg tRNA}
5023050	5023126	-	77	94967031	Acid345_R0041	-	^{16 Met tRNA}
5080202	5080294	-	93	94967031	Acid345_R0042	-	^{08 Ser tRNA}
5256011	5256127	-	117	94967031	Acid345_R0043	-	5S ribosomal RNA
5256362	5259327	-	2966	94967031	Acid345_R0044	-	23S ribosomal RNA
5259667	5259742	-	76	94967031	Acid345_R0045	-	^{02 Ala tRNA}
5259750	5259826	-	77	94967031	Acid345_R0046	-	^{14 Ile tRNA}
5260068	5261561	-	1494	94967031	Acid345_R0047	-	16S ribosomal RNA
5276687	5276776	-	90	94967031	Acid345_R0048	-	^{08 Ser tRNA}
5323474	5323676	-	203	94967031	Acid345_R0049	-
5385087	5385160	-	74	94967031	Acid345_R0050	-	^{05 Gln tRNA}
5543513	5543588	-	76	94967031	Acid345_R0051	-	^{20 Trp tRNA}
5545511	5545586	-	76	94967031	Acid345_R0052	-	^{12 Thr tRNA}
5545607	5545681	-	75	94967031	Acid345_R0053	-	^{01 Gly tRNA}
5545970	5546057	-	88	94967031	Acid345_R0054	-	^{18 Tyr tRNA}
5546322	5546397	-	76	94967031	Acid345_R0055	-	^{12 Thr tRNA}