Материалы:NC 008149

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008149            4534590 bp    DNA     circular BCT 08-AUG-2007
   DEFINITION  Yersinia pestis Nepal516, complete genome.
   ACCESSION   NC_008149
   VERSION     NC_008149.1  GI:108810166
   KEYWORDS    .
   SOURCE      Yersinia pestis Nepal516
     ORGANISM  Yersinia pestis Nepal516
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Yersinia.
   REFERENCE   1  (bases 1 to 4534590)
     AUTHORS   Chain,P.S., Hu,P., Malfatti,S.A., Radnedge,L., Larimer,F.,
               Vergez,L.M., Worsham,P., Chu,M.C. and Andersen,G.L.
     TITLE     Complete Genome Sequence of Yersinia pestis Strains Antiqua and
               Nepal516: Evidence of Gene Reduction in an Emerging Pathogen
     JOURNAL   J. Bacteriol. 188 (12), 4453-4463 (2006)
      PUBMED   16740952
   REFERENCE   2  (bases 1 to 4534590)
     AUTHORS   Barry,K., Lucas,S., Lapidus,A., Copeland,A., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Chain,P.,
               Hu,P., Malfatti,S.A., Radnedge,L., Vergez,L.M., Larimer,F.,
               Land,M., Hauser,L., Worsham,P., Chu,M.C., Andersen,G. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Yersinia pestis Nepal516
     JOURNAL   Unpublished
   REFERENCE   3  (bases 1 to 4534590)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (12-JUN-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   4  (bases 1 to 4534590)
     AUTHORS   Barry,K., Lucas,S., Lapidus,A., Copeland,A., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Chain,P.,
               Hu,P., Malfatti,S.A., Radnedge,L., Vergez,L.M., Larimer,F.,
               Land,M., Hauser,L., Worsham,P., Chu,M.C., Andersen,G. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (06-APR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000305.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2773192
               Source DNA and bacteria available from Gary Andersen
               (glandersen@lbl.gov)
               Contacts: Gary Andersen (glandersen@lbl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Annotation done by JGI-ORNL
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
12264	13808	+	1545	108810166	YPN_r001	-	16S ribosomal RNA
13943	14018	+	76	108810166	YPN_r002	-	^{04 Glu tRNA}
14271	17177	+	2907	108810166	YPN_r003	-	23S ribosomal RNA
17285	17404	+	120	108810166	YPN_r004	-	5S ribosomal RNA
17418	17493	+	76	108810166	YPN_r005	-	^{12 Thr tRNA}
17532	17651	+	120	108810166	YPN_r005a	-	5S ribosomal RNA
80501	80761	+	261	108810166	YPN_r006	-	cobalamin riboswitch
83991	85533	+	1543	108810166	YPN_r007	-	16S ribosomal RNA
85670	85745	+	76	108810166	YPN_r008	-	^{04 Glu tRNA}
85998	88904	+	2907	108810166	YPN_r009	-	23S ribosomal RNA
89012	89131	+	120	108810166	YPN_r010	-	5S ribosomal RNA
89255	89331	+	77	108810166	YPN_r011	-	^{06 Asp tRNA}
89340	89415	+	76	108810166	YPN_r012	-	^{20 Trp tRNA}
147974	148050	+	77	108810166	YPN_r013	-	^{11 Arg tRNA}
148134	148209	+	76	108810166	YPN_r014	-	^{09 His tRNA}
148226	148312	+	87	108810166	YPN_r015	-	^{15 Leu tRNA}
148388	148464	+	77	108810166	YPN_r016	-	^{03 Pro tRNA}
250375	251917	+	1543	108810166	YPN_r017	-	16S ribosomal RNA
252020	252096	+	77	108810166	YPN_r018	-	^{14 Ile tRNA}
252148	252223	+	76	108810166	YPN_r019	-	^{02 Ala tRNA}
252442	255348	+	2907	108810166	YPN_r020	-	23S ribosomal RNA
255447	255575	+	129	108810166	YPN_r021	-	5S ribosomal RNA
262132	262207	+	76	108810166	YPN_r022	-	^{12 Thr tRNA}
262226	262310	+	85	108810166	YPN_r023	-	^{18 Tyr tRNA}
262460	262534	+	75	108810166	YPN_r024	-	^{01 Gly tRNA}
262541	262616	+	76	108810166	YPN_r025	-	^{12 Thr tRNA}
293240	294782	+	1543	108810166	YPN_r026	-	16S ribosomal RNA
294919	294994	+	76	108810166	YPN_r027	-	^{04 Glu tRNA}
295247	298153	+	2907	108810166	YPN_r028	-	23S ribosomal RNA
298261	298380	+	120	108810166	YPN_r029	-	5S ribosomal RNA
306864	306970	+	107	108810166	YPN_r030	-	Spot 42 RNA
308820	309074	+	255	108810166	YPN_r031	-	regulatory RNA CsrC
366563	366649	-	87	108810166	YPN_r032	-	^{15 Leu tRNA}
608511	608587	-	77	108810166	YPN_r033	-	^{16 Met tRNA}
627242	627431	+	190	108810166	YPN_r034	-	FMN riboswitch
706288	706461	-	174	108810166	YPN_r035	-	SraG RNA
763209	763293	+	85	108810166	YPN_r036	-	^{15 Leu tRNA}
924640	924732	+	93	108810166	YPN_r037	-	^{08 Ser tRNA}
924741	924817	+	77	108810166	YPN_r038	-	^{11 Arg tRNA}
924875	924951	+	77	108810166	YPN_r039	-	^{11 Arg tRNA}
925031	925107	+	77	108810166	YPN_r040	-	^{11 Arg tRNA}
953365	954907	+	1543	108810166	YPN_r041	-	16S ribosomal RNA
955010	955086	+	77	108810166	YPN_r042	-	^{14 Ile tRNA}
955138	955213	+	76	108810166	YPN_r043	-	^{02 Ala tRNA}
955432	958338	+	2907	108810166	YPN_r044	-	23S ribosomal RNA
958446	958565	+	120	108810166	YPN_r045	-	5S ribosomal RNA
1107007	1107126	+	120	108810166	YPN_r046	-	SRP RNA
1179290	1179366	+	77	108810166	YPN_r047	-	^{11 Arg tRNA}
1272072	1272146	-	75	108810166	YPN_r048	-	^{05 Gln tRNA}
1272152	1272228	-	77	108810166	YPN_r049	-	^{16 Met tRNA}
1272261	1272335	-	75	108810166	YPN_r050	-	^{05 Gln tRNA}
1272431	1272505	-	75	108810166	YPN_r051	-	^{05 Gln tRNA}
1272535	1272619	-	85	108810166	YPN_r052	-	^{15 Leu tRNA}
1272627	1272703	-	77	108810166	YPN_r053	-	^{16 Met tRNA}
1387990	1388154	-	165	108810166	YPN_r054	-	tke1 RNA
1588507	1588582	-	76	108810166	YPN_r055	-	^{02 Ala tRNA}
1588660	1588735	-	76	108810166	YPN_r056	-	^{02 Ala tRNA}
1591367	1591442	+	76	108810166	YPN_r057	-	^{13 Val tRNA}
1591479	1591554	+	76	108810166	YPN_r058	-	^{13 Val tRNA}
1591599	1591674	+	76	108810166	YPN_r059	-	^{13 Val tRNA}
1591874	1591949	+	76	108810166	YPN_r060	-	^{10 Lys tRNA}
1707540	1707629	-	90	108810166	YPN_r061	-	^{08 Ser tRNA}
1715950	1716039	-	90	108810166	YPN_r062	-	^{08 Ser tRNA}
1849381	1849465	-	85	108810166	YPN_r063	-	^{18 Tyr tRNA}
2087229	2087305	+	77	108810166	YPN_r064	-	^{13 Val tRNA}
2087365	2087441	+	77	108810166	YPN_r065	-	^{13 Val tRNA}
2500260	2500334	-	75	108810166	YPN_r067	-	^{11 Arg tRNA}
2536627	2536712	-	86	108810166	YPN_r068	-	^{15 Leu tRNA}
2536723	2536796	-	74	108810166	YPN_r069	-	^{19 Cys tRNA}
2536849	2536924	-	76	108810166	YPN_r070	-	^{01 Gly tRNA}
2543373	2543448	-	76	108810166	YPN_r071	-	^{10 Lys tRNA}
2619107	2619356	+	250	108810166	YPN_r072	-	SraC_RyeA RNA
2619151	2619246	-	96	108810166	YPN_r073	-	RyeB RNA
2672982	2673057	+	76	108810166	YPN_r074	-	^{07 Asn tRNA}
2687286	2687361	+	76	108810166	YPN_r075	-	^{07 Asn tRNA}
2843940	2844027	-	88	108810166	YPN_r076	-	^{08 Ser tRNA}
3067066	3067142	+	77	108810166	YPN_r077	-	^{03 Pro tRNA}
3099191	3099266	-	76	108810166	YPN_r078	-	^{12 Thr tRNA}
3099272	3099359	-	88	108810166	YPN_r079	-	^{08 Ser tRNA}
3101831	3101965	+	135	108810166	YPN_r080	-	antisense RNA affecting ompF expression
3230551	3230620	-	70	108810166	YPN_r081	-	Xaa tRNA
3230649	3230724	-	76	108810166	YPN_r082	-	^{10 Lys tRNA}
3230752	3230827	-	76	108810166	YPN_r083	-	^{10 Lys tRNA}
3257923	3258286	+	364	108810166	YPN_r084	-	tmRNA
3273690	3273766	-	77	108810166	YPN_r085	-	^{06 Asp tRNA}
3281057	3281133	-	77	108810166	YPN_r086	-	^{06 Asp tRNA}
3281257	3281376	-	120	108810166	YPN_r087	-	5S ribosomal RNA
3281484	3284390	-	2907	108810166	YPN_r088	-	23S ribosomal RNA
3284643	3284718	-	76	108810166	YPN_r089	-	^{04 Glu tRNA}
3284855	3286397	-	1543	108810166	YPN_r090	-	16S ribosomal RNA
3327216	3327497	-	282	108810166	YPN_r091	-	regulatory RNA csrB
3339485	3339561	+	77	108810166	YPN_r092	-	^{16 Met tRNA}
3339685	3339761	+	77	108810166	YPN_r093	-	^{16 Met tRNA}
3469332	3469405	-	74	108810166	YPN_r094	-	^{01 Gly tRNA}
3499848	3500029	+	182	108810166	YPN_r095	-	6S ribosomal RNA
3559830	3559905	+	76	108810166	YPN_r096	-	^{17 Phe tRNA}
3701919	3701995	-	77	108810166	YPN_r097	-	^{16 Met tRNA}
3702056	3702142	-	87	108810166	YPN_r098	-	^{15 Leu tRNA}
3766790	3766865	-	76	108810166	YPN_r099	-	^{01 Gly tRNA}
3766957	3767032	-	76	108810166	YPN_r100	-	^{01 Gly tRNA}
3796802	3796877	+	76	108810166	YPN_r101	-	^{17 Phe tRNA}
3901359	3901478	-	120	108810166	YPN_r102	-	5S ribosomal RNA
3901586	3904492	-	2907	108810166	YPN_r103	-	23S ribosomal RNA
3904745	3904820	-	76	108810166	YPN_r104	-	^{04 Glu tRNA}
3904957	3906499	-	1543	108810166	YPN_r105	-	16S ribosomal RNA
3912327	3912701	-	375	108810166	YPN_r106	-	RNA component of RNaseP
4193176	4193252	-	77	108810166	YPN_r107	-	^{03 Pro tRNA}
4223558	4223648	-	91	108810166	YPN_r108	-	Sec tRNA