Материалы:NC 008228

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008228            5187005 bp    DNA     circular BCT 30-JUN-2006
   DEFINITION  Pseudoalteromonas atlantica T6c, complete genome.
   ACCESSION   NC_008228
   VERSION     NC_008228.1  GI:109896332
   KEYWORDS    .
   SOURCE      Pseudoalteromonas atlantica T6c
     ORGANISM  Pseudoalteromonas atlantica T6c
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Pseudoalteromonadaceae; Pseudoalteromonas.
   REFERENCE   1  (bases 1 to 5187005)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Karls,A.C., Bartlett,D., Higgins,B.P. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Pseudoalteromonas atlantica T6c
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5187005)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (30-JUN-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5187005)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Karls,A.C., Bartlett,D., Higgins,B.P. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (15-JUN-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000388.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000130
               Source DNA and bacteria available from Anna C. Karls
               (akarls@uga.edu)
               Contacts: Anna C. Karls (akarls@uga.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
36085	37615	+	1531	109896332	Patl_R0001	-	16S ribosomal RNA
37720	37795	+	76	109896332	Patl_R0002	-	^{02 Ala tRNA}
37814	37890	+	77	109896332	Patl_R0003	-	^{14 Ile tRNA}
38270	41154	+	2885	109896332	Patl_R0004	-	23S ribosomal RNA
41317	41432	+	116	109896332	Patl_R0005	-	5S ribosomal RNA
88587	88662	-	76	109896332	Patl_R0006	-	^{17 Phe tRNA}
384670	384746	-	77	109896332	Patl_R0007	-	^{11 Arg tRNA}
458952	460482	+	1531	109896332	Patl_R0008	-	16S ribosomal RNA
460587	460662	+	76	109896332	Patl_R0009	-	^{02 Ala tRNA}
460681	460757	+	77	109896332	Patl_R0010	-	^{14 Ile tRNA}
461137	464021	+	2885	109896332	Patl_R0011	-	23S ribosomal RNA
464285	464400	+	116	109896332	Patl_R0012	-	5S ribosomal RNA
677910	677986	+	77	109896332	Patl_R0013	-	^{20 Trp tRNA}
820728	821023	+	296	109896332	Patl_R0014	-	RNaseP RNA
915633	915722	+	90	109896332	Patl_R0015	-	^{08 Ser tRNA}
1202293	1203823	+	1531	109896332	Patl_R0016	-	16S ribosomal RNA
1203928	1204003	+	76	109896332	Patl_R0017	-	^{02 Ala tRNA}
1204022	1204098	+	77	109896332	Patl_R0018	-	^{14 Ile tRNA}
1204478	1207362	+	2885	109896332	Patl_R0019	-	23S ribosomal RNA
1207525	1207640	+	116	109896332	Patl_R0020	-	5S ribosomal RNA
1380226	1380383	-	158	109896332	Patl_R0021	-
1385058	1385134	-	77	109896332	Patl_R0022	-	^{16 Met tRNA}
1609448	1610978	+	1531	109896332	Patl_R0023	-	16S ribosomal RNA
1611083	1611158	+	76	109896332	Patl_R0024	-	^{02 Ala tRNA}
1611177	1611253	+	77	109896332	Patl_R0025	-	^{14 Ile tRNA}
1611633	1614517	+	2885	109896332	Patl_R0026	-	23S ribosomal RNA
1614680	1614795	+	116	109896332	Patl_R0027	-	5S ribosomal RNA
1619302	1619406	+	105	109896332	Patl_R0028	-
1623355	1623431	+	77	109896332	Patl_R0029	-	^{20 Trp tRNA}
1882865	1882949	+	85	109896332	Patl_R0030	-	^{15 Leu tRNA}
2026333	2026409	+	77	109896332	Patl_R0031	-	^{16 Met tRNA}
2032735	2032850	+	116	109896332	Patl_R0032	-
2078340	2078693	-	354	109896332	Patl_R0033	-	tmRNA
2299796	2299872	+	77	109896332	Patl_R0034	-	^{03 Pro tRNA}
2337564	2337664	+	101	109896332	Patl_R0035	-
2725601	2725677	-	77	109896332	Patl_R0036	-	^{16 Met tRNA}
2726512	2726588	-	77	109896332	Patl_R0037	-	^{16 Met tRNA}
2877458	2877534	-	77	109896332	Patl_R0038	-	^{06 Asp tRNA}
2877561	2877637	-	77	109896332	Patl_R0039	-	^{06 Asp tRNA}
2877670	2877746	-	77	109896332	Patl_R0040	-	^{06 Asp tRNA}
2932694	2932825	+	132	109896332	Patl_R0041	-
2976579	2976665	-	87	109896332	Patl_R0042	-	^{15 Leu tRNA}
2976717	2976790	-	74	109896332	Patl_R0043	-	^{19 Cys tRNA}
2976865	2976939	-	75	109896332	Patl_R0044	-	^{01 Gly tRNA}
2981810	2981901	-	92	109896332	Patl_R0045	-	^{08 Ser tRNA}
2981961	2982052	-	92	109896332	Patl_R0046	-	^{08 Ser tRNA}
3042519	3042595	-	77	109896332	Patl_R0047	-	^{13 Val tRNA}
3111841	3111915	+	75	109896332	Patl_R0048	-	^{05 Gln tRNA}
3120067	3120143	+	77	109896332	Patl_R0049	-	^{16 Met tRNA}
3120190	3120274	+	85	109896332	Patl_R0050	-	^{15 Leu tRNA}
3120279	3120353	+	75	109896332	Patl_R0051	-	^{05 Gln tRNA}
3120390	3120464	+	75	109896332	Patl_R0052	-	^{05 Gln tRNA}
3535582	3535657	-	76	109896332	Patl_R0053	-	^{04 Glu tRNA}
3535988	3536063	-	76	109896332	Patl_R0054	-	^{04 Glu tRNA}
3536243	3536318	-	76	109896332	Patl_R0055	-	^{04 Glu tRNA}
3536466	3536541	-	76	109896332	Patl_R0056	-	^{02 Ala tRNA}
3538709	3538784	+	76	109896332	Patl_R0057	-	^{13 Val tRNA}
3538942	3539017	+	76	109896332	Patl_R0058	-	^{13 Val tRNA}
3539083	3539158	+	76	109896332	Patl_R0059	-	^{13 Val tRNA}
3560104	3560179	-	76	109896332	Patl_R0060	-	^{10 Lys tRNA}
3560215	3560290	-	76	109896332	Patl_R0061	-	^{10 Lys tRNA}
3590980	3591056	+	77	109896332	Patl_R0062	-	^{07 Asn tRNA}
3591151	3591227	+	77	109896332	Patl_R0063	-	^{07 Asn tRNA}
3642021	3642097	-	77	109896332	Patl_R0064	-	^{11 Arg tRNA}
3642145	3642221	-	77	109896332	Patl_R0065	-	^{11 Arg tRNA}
3642328	3642418	-	91	109896332	Patl_R0066	-	^{08 Ser tRNA}
3740303	3740377	+	75	109896332	Patl_R0067	-	^{11 Arg tRNA}
3782051	3782135	-	85	109896332	Patl_R0068	-	^{15 Leu tRNA}
3782139	3782214	-	76	109896332	Patl_R0069	-	^{09 His tRNA}
3782243	3782319	-	77	109896332	Patl_R0070	-	^{11 Arg tRNA}
3782350	3782426	-	77	109896332	Patl_R0071	-	^{03 Pro tRNA}
4180208	4180282	-	75	109896332	Patl_R0072	-	^{01 Gly tRNA}
4180333	4180407	-	75	109896332	Patl_R0073	-	^{01 Gly tRNA}
4278490	4278575	-	86	109896332	Patl_R0074	-	^{15 Leu tRNA}
4810989	4811064	-	76	109896332	Patl_R0075	-	^{12 Thr tRNA}
4811071	4811145	-	75	109896332	Patl_R0076	-	^{01 Gly tRNA}
4811184	4811268	-	85	109896332	Patl_R0077	-	^{18 Tyr tRNA}
4811276	4811351	-	76	109896332	Patl_R0078	-	^{12 Thr tRNA}
4833103	4833218	-	116	109896332	Patl_R0079	-	5S ribosomal RNA
4833482	4836366	-	2885	109896332	Patl_R0080	-	23S ribosomal RNA
4836746	4836822	-	77	109896332	Patl_R0081	-	^{14 Ile tRNA}
4836841	4836916	-	76	109896332	Patl_R0082	-	^{02 Ala tRNA}
4837021	4838551	-	1531	109896332	Patl_R0083	-	16S ribosomal RNA
5087974	5088049	+	76	109896332	Patl_R0084	-	^{12 Thr tRNA}