Материалы:NC 008258

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008258            4574284 bp    DNA     circular BCT 14-SEP-2007
   DEFINITION  Shigella flexneri 5 str. 8401, complete genome.
   ACCESSION   NC_008258
   VERSION     NC_008258.1  GI:110804074
   KEYWORDS    .
   SOURCE      Shigella flexneri 5 str. 8401
     ORGANISM  Shigella flexneri 5 str. 8401
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Shigella.
   REFERENCE   1  (bases 1 to 4574284)
     AUTHORS   Nie,H., Yang,F., Zhang,X., Yang,J., Chen,L., Wang,J., Xiong,Z.,
               Peng,J., Sun,L., Dong,J., Xue,Y., Xu,X., Chen,S., Yao,Z., Shen,Y.
               and Jin,Q.
     TITLE     Complete genome sequence of Shigella flexneri 5b and comparison
               with Shigella flexneri 2a
     JOURNAL   (er) BMC Genomics 7, 173 (2006)
      PUBMED   16822325
   REFERENCE   2  (bases 1 to 4574284)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (28-JUL-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4574284)
     AUTHORS   Nie,H. and Jin,Q.
     TITLE     Direct Submission
     JOURNAL   Submitted (22-FEB-2006) State Key Laboratory for Moleclular
               Virology and Genetic Engineering, Microbial Genome Center of
               Chinese Ministry of Public Health, 100 YingXin Street, XuanWu,
               Beijing, Beijing 100052, China
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000266.
               Strain 8401 is available from the National Institute for
               Communicable Disease Control and Prevention, Chinese Center for
               Disease Control and Prevention.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
214329	215870	+	1542	110804074	SFV_0185	-	16S ribosomal RNA
215956	216031	+	76	110804074	SFV_0186	-	^{04 Glu tRNA}
216225	219128	+	2904	110804074	SFV_0187	-	23S ribosomal RNA
219223	219341	+	119	110804074	SFV_0188	-	5S ribosomal RNA
219394	219470	+	77	110804074	SFV_0189	-	^{06 Asp tRNA}
229056	229132	+	77	110804074	SFV_0200	-	^{06 Asp tRNA}
300690	300765	-	76	110804074	SFV_0284	-	^{12 Thr tRNA}
521805	521881	+	77	110804074	SFV_0498	-	^{11 Arg tRNA}
619435	619510	-	76	110804074	SFV_0591	-	^{10 Lys tRNA}
619514	619589	-	76	110804074	SFV_0592	-	^{13 Val tRNA}
619725	619800	-	76	110804074	SFV_0593	-	^{10 Lys tRNA}
699071	699147	+	77	110804074	SFV_0658	-	^{16 Met tRNA}
699157	699241	+	85	110804074	SFV_0659	-	^{15 Leu tRNA}
699265	699339	+	75	110804074	SFV_0660	-	^{05 Gln tRNA}
699374	699448	+	75	110804074	SFV_0661	-	^{05 Gln tRNA}
699464	699540	+	77	110804074	SFV_0662	-	^{16 Met tRNA}
699589	699663	+	75	110804074	SFV_0663	-	^{05 Gln tRNA}
699701	699775	+	75	110804074	SFV_0664	-	^{05 Gln tRNA}
761608	761682	-	75	110804074	SFV_0729	-	^{01 Gly tRNA}
761686	761760	-	75	110804074	SFV_0730	-	^{12 Thr tRNA}
761763	761839	-	77	110804074	SFV_0731	-	^{11 Arg tRNA}
761841	761917	-	77	110804074	SFV_0732	-	^{16 Met tRNA}
911349	911436	-	88	110804074	SFV_0874	-	^{08 Ser tRNA}
1028186	1028273	-	88	110804074	SFV_0980	-	^{08 Ser tRNA}
1091825	1091912	-	88	110804074	SFV_1043	-	^{08 Ser tRNA}
1297271	1297355	-	85	110804074	SFV_1244	-	^{18 Tyr tRNA}
1416161	1416237	+	77	110804074	SFV_1364	-	^{16 Met tRNA}
1416239	1416315	+	77	110804074	SFV_1365	-	^{11 Arg tRNA}
1416318	1416393	+	76	110804074	SFV_1366	-	^{12 Thr tRNA}
1416397	1416471	+	75	110804074	SFV_1367	-	^{01 Gly tRNA}
1580026	1580102	-	77	110804074	SFV_1538	-	^{11 Arg tRNA}
1580204	1580279	-	76	110804074	SFV_1539	-	^{16 Met tRNA}
1725568	1725644	+	77	110804074	SFV_1687	-	^{13 Val tRNA}
1725649	1725725	+	77	110804074	SFV_1688	-	^{13 Val tRNA}
1937422	1937496	-	75	110804074	SFV_1888	-	^{01 Gly tRNA}
1937500	1937575	-	76	110804074	SFV_1889	-	^{12 Thr tRNA}
1937578	1937654	-	77	110804074	SFV_1890	-	^{11 Arg tRNA}
1937656	1937731	-	76	110804074	SFV_1891	-	^{16 Met tRNA}
1996770	1996856	-	87	110804074	SFV_1953	-	^{15 Leu tRNA}
1996869	1996942	-	74	110804074	SFV_1954	-	^{19 Cys tRNA}
1996997	1997072	-	76	110804074	SFV_1955	-	^{01 Gly tRNA}
2061198	2061272	-	75	110804074	SFV_2030	-	^{01 Gly tRNA}
2061276	2061351	-	76	110804074	SFV_2031	-	^{12 Thr tRNA}
2061354	2061430	-	77	110804074	SFV_2032	-	^{10 Lys tRNA}
2061432	2061507	-	76	110804074	SFV_2033	-	^{16 Met tRNA}
2068694	2068783	-	90	110804074	SFV_2044	-	^{08 Ser tRNA}
2069775	2069850	+	76	110804074	SFV_2046	-	^{07 Asn tRNA}
2077654	2077729	-	76	110804074	SFV_2055	-	^{07 Asn tRNA}
2079462	2079537	+	76	110804074	SFV_2058	-	^{07 Asn tRNA}
2081872	2081947	+	76	110804074	SFV_2061	-	^{07 Asn tRNA}
2303108	2303184	+	77	110804074	SFV_2267	-	^{03 Pro tRNA}
2468390	2468464	+	75	110804074	SFV_2416	-	^{11 Arg tRNA}
2513270	2513345	-	76	110804074	SFV_2452	-	^{02 Ala tRNA}
2516051	2516126	+	76	110804074	SFV_2456	-	^{13 Val tRNA}
2516170	2516245	+	76	110804074	SFV_2457	-	^{13 Val tRNA}
2516250	2516325	+	76	110804074	SFV_2458	-	^{10 Lys tRNA}
2719591	2719709	-	119	110804074	SFV_2651	-	5S ribosomal RNA
2719804	2722707	-	2904	110804074	SFV_2652	-	23S ribosomal RNA
2722901	2722976	-	76	110804074	SFV_2653	-	^{04 Glu tRNA}
2723062	2724603	-	1542	110804074	SFV_2654	-	16S ribosomal RNA
2773368	2773444	+	77	110804074	SFV_2700	-	^{16 Met tRNA}
2773446	2773522	+	77	110804074	SFV_2701	-	^{11 Arg tRNA}
2773525	2773600	+	76	110804074	SFV_2702	-	^{12 Thr tRNA}
2773604	2773678	+	75	110804074	SFV_2703	-	^{01 Gly tRNA}
2878553	2878645	+	93	110804074	SFV_2810	-	^{08 Ser tRNA}
2878649	2878725	+	77	110804074	SFV_2811	-	^{11 Arg tRNA}
2878790	2878866	+	77	110804074	SFV_2812	-	^{11 Arg tRNA}
2878931	2879007	+	77	110804074	SFV_2813	-	^{11 Arg tRNA}
2910825	2910900	+	76	110804074	SFV_2846	-	^{16 Met tRNA}
2954823	2954899	+	77	110804074	SFV_2893	-	^{16 Met tRNA}
2954933	2955009	+	77	110804074	SFV_2894	-	^{16 Met tRNA}
2996991	2997064	-	74	110804074	SFV_2927	-	^{01 Gly tRNA}
3090255	3090330	+	76	110804074	SFV_3026	-	^{17 Phe tRNA}
3177925	3178000	+	76	110804074	SFV_3110	-	^{16 Met tRNA}
3274053	3274129	-	77	110804074	SFV_3201	-	^{16 Met tRNA}
3277913	3277999	-	87	110804074	SFV_3204	-	^{15 Leu tRNA}
3368182	3368298	-	117	110804074	SFV_3294	-	5S ribosomal RNA
3368339	3368414	-	76	110804074	SFV_3295	-	^{12 Thr tRNA}
3368427	3368545	-	119	110804074	SFV_3296	-	5S ribosomal RNA
3368640	3371543	-	2904	110804074	SFV_3297	-	23S ribosomal RNA
3371737	3371812	-	76	110804074	SFV_3298	-	^{04 Glu tRNA}
3371898	3373439	-	1542	110804074	SFV_3299	-	16S ribosomal RNA
3611713	3611789	+	77	110804074	SFV_3542	-	^{03 Pro tRNA}
3730174	3730292	-	119	110804074	SFV_3646	-	5S ribosomal RNA
3730387	3733290	-	2904	110804074	SFV_3647	-	23S ribosomal RNA
3733484	3733559	-	76	110804074	SFV_3648	-	^{04 Glu tRNA}
3733645	3735186	-	1542	110804074	SFV_3649	-	16S ribosomal RNA
3791507	3791583	-	77	110804074	SFV_3704	-	^{03 Pro tRNA}
3791626	3791712	-	87	110804074	SFV_3705	-	^{15 Leu tRNA}
3791733	3791808	-	76	110804074	SFV_3706	-	^{09 His tRNA}
3791867	3791943	-	77	110804074	SFV_3707	-	^{11 Arg tRNA}
3826408	3826483	-	76	110804074	SFV_3738	-	^{20 Trp tRNA}
3826492	3826568	-	77	110804074	SFV_3739	-	^{06 Asp tRNA}
3826621	3826739	-	119	110804074	SFV_3740	-	5S ribosomal RNA
3826834	3829737	-	2904	110804074	SFV_3741	-	23S ribosomal RNA
3829931	3830006	-	76	110804074	SFV_3742	-	^{04 Glu tRNA}
3830092	3831633	-	1542	110804074	SFV_3743	-	16S ribosomal RNA
3971892	3971982	-	91	110804074	SFV_3871	-	Sec tRNA
4157855	4159396	+	1542	110804074	SFV_4041	-	16S ribosomal RNA
4159482	4159557	+	76	110804074	SFV_4042	-	^{04 Glu tRNA}
4159751	4162654	+	2904	110804074	SFV_4043	-	23S ribosomal RNA
4162749	4162867	+	119	110804074	SFV_4044	-	5S ribosomal RNA
4166325	4166400	+	76	110804074	SFV_4048	-	^{12 Thr tRNA}
4166409	4166493	+	85	110804074	SFV_4049	-	^{18 Tyr tRNA}
4166610	4166684	+	75	110804074	SFV_4050	-	^{01 Gly tRNA}
4166691	4166766	+	76	110804074	SFV_4051	-	^{12 Thr tRNA}
4198290	4199835	+	1546	110804074	SFV_4079	-	16S ribosomal RNA
4199921	4199996	+	76	110804074	SFV_4080	-	^{04 Glu tRNA}
4200190	4203093	+	2904	110804074	SFV_4081	-	23S ribosomal RNA
4203188	4203306	+	119	110804074	SFV_4082	-	5S ribosomal RNA
4364730	4364814	-	85	110804074	SFV_4228	-	^{15 Leu tRNA}
4434756	4434831	-	76	110804074	SFV_4290	-	^{17 Phe tRNA}
4464764	4464839	+	76	110804074	SFV_4320	-	^{01 Gly tRNA}
4464997	4465072	+	76	110804074	SFV_4321	-	^{01 Gly tRNA}
4465108	4465183	+	76	110804074	SFV_4322	-	^{01 Gly tRNA}
4465219	4465294	+	76	110804074	SFV_4323	-	^{01 Gly tRNA}
4540013	4540099	-	87	110804074	SFV_4402	-	^{15 Leu tRNA}
4540134	4540220	-	87	110804074	SFV_4403	-	^{15 Leu tRNA}
4540249	4540335	-	87	110804074	SFV_4404	-	^{15 Leu tRNA}