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   LOCUS       NC_008321            4706287 bp    DNA     circular BCT 05-SEP-2006
   DEFINITION  Shewanella sp. MR-4, complete genome.
   ACCESSION   NC_008321
   VERSION     NC_008321.1  GI:113968346
   KEYWORDS    .
   SOURCE      Shewanella sp. MR-4
     ORGANISM  Shewanella sp. MR-4
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 4706287)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Nealson,K., Konstantinidis,K., Klappenbach,J.,
               Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Shewanella sp. MR-4
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4706287)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (05-SEP-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4706287)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Nealson,K., Konstantinidis,K., Klappenbach,J.,
               Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (22-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000446.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000369
               Source DNA and bacteria available from James Tiedje
               (tiedjej@msu.edu)
               Contacts: James Tiedje (tiedjej@msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376)
               Additional Notes:There are an unresolved number of tandem repeats
               in the region 419,046-426,962.
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
42695 44229 + 1535 113968346 Shewmr4_R0001 - 16S ribosomal RNA
44542 47434 + 2893 113968346 Shewmr4_R0002 - 23S ribosomal RNA
47656 47771 + 116 113968346 Shewmr4_R0003 - 5S ribosomal RNA
47808 47884 + 77 113968346 Shewmr4_R0004 - 06 Asp tRNA
121959 122049 - 91 113968346 Shewmr4_R0005 - Sec tRNA
152960 153194 - 235 113968346 Shewmr4_R0006 -
201986 203520 + 1535 113968346 Shewmr4_R0007 - 16S ribosomal RNA
203641 203717 + 77 113968346 Shewmr4_R0008 - 14 Ile tRNA
203763 203838 + 76 113968346 Shewmr4_R0009 - 02 Ala tRNA
204112 207004 + 2893 113968346 Shewmr4_R0010 - 23S ribosomal RNA
207136 207251 + 116 113968346 Shewmr4_R0011 - 5S ribosomal RNA
210615 210690 + 76 113968346 Shewmr4_R0012 - 12 Thr tRNA
210698 210782 + 85 113968346 Shewmr4_R0013 - 18 Tyr tRNA
210818 210891 + 74 113968346 Shewmr4_R0014 - 01 Gly tRNA
210901 210976 + 76 113968346 Shewmr4_R0015 - 12 Thr tRNA
253459 254993 + 1535 113968346 Shewmr4_R0016 - 16S ribosomal RNA
255305 258197 + 2893 113968346 Shewmr4_R0017 - 23S ribosomal RNA
258419 258534 + 116 113968346 Shewmr4_R0018 - 5S ribosomal RNA
258571 258647 + 77 113968346 Shewmr4_R0019 - 06 Asp tRNA
405888 405964 + 77 113968346 Shewmr4_R0020 - 11 Arg tRNA
406018 406093 + 76 113968346 Shewmr4_R0021 - 09 His tRNA
406195 406271 + 77 113968346 Shewmr4_R0022 - 03 Pro tRNA
406325 406401 + 77 113968346 Shewmr4_R0023 - 03 Pro tRNA
683545 683620 + 76 113968346 Shewmr4_R0024 - 01 Gly tRNA
683653 683728 + 76 113968346 Shewmr4_R0025 - 01 Gly tRNA
683761 683836 + 76 113968346 Shewmr4_R0026 - 01 Gly tRNA
683881 683956 + 76 113968346 Shewmr4_R0027 - 01 Gly tRNA
827890 828008 + 119 113968346 Shewmr4_R0028 -
828009 828129 + 121 113968346 Shewmr4_R0029 -
994574 994741 + 168 113968346 Shewmr4_R0030 -
1145358 1145434 + 77 113968346 Shewmr4_R0031 - 20 Trp tRNA
1176598 1176674 + 77 113968346 Shewmr4_R0032 - 16 Met tRNA
1176729 1176813 + 85 113968346 Shewmr4_R0033 - 15 Leu tRNA
1176861 1176935 + 75 113968346 Shewmr4_R0034 - 05 Gln tRNA
1176958 1177032 + 75 113968346 Shewmr4_R0035 - 05 Gln tRNA
1177034 1177110 + 77 113968346 Shewmr4_R0036 - 16 Met tRNA
1177194 1177278 + 85 113968346 Shewmr4_R0037 - 15 Leu tRNA
1177299 1177373 + 75 113968346 Shewmr4_R0038 - 05 Gln tRNA
1192179 1192265 + 87 113968346 Shewmr4_R0039 - 15 Leu tRNA
1192349 1192425 + 77 113968346 Shewmr4_R0040 - 16 Met tRNA
1198787 1198899 + 113 113968346 Shewmr4_R0041 -
1327447 1327538 + 92 113968346 Shewmr4_R0042 - 08 Ser tRNA
1327559 1327635 + 77 113968346 Shewmr4_R0043 - 11 Arg tRNA
1327666 1327742 + 77 113968346 Shewmr4_R0044 - 11 Arg tRNA
1327825 1327901 + 77 113968346 Shewmr4_R0045 - 11 Arg tRNA
1327945 1328021 + 77 113968346 Shewmr4_R0046 - 11 Arg tRNA
1328066 1328142 + 77 113968346 Shewmr4_R0047 - 11 Arg tRNA
1328179 1328270 + 92 113968346 Shewmr4_R0048 - 08 Ser tRNA
1328365 1328441 + 77 113968346 Shewmr4_R0049 - 11 Arg tRNA
1380672 1380747 - 76 113968346 Shewmr4_R0050 - 12 Thr tRNA
1380754 1380829 - 76 113968346 Shewmr4_R0051 - 17 Phe tRNA
1381287 1381362 - 76 113968346 Shewmr4_R0052 - 12 Thr tRNA
1381369 1381444 - 76 113968346 Shewmr4_R0053 - 17 Phe tRNA
1460028 1460103 - 76 113968346 Shewmr4_R0054 - 11 Arg tRNA
1587682 1587757 - 76 113968346 Shewmr4_R0056 - 13 Val tRNA
1587783 1587858 - 76 113968346 Shewmr4_R0057 - 13 Val tRNA
1587900 1587975 - 76 113968346 Shewmr4_R0058 - 13 Val tRNA
1588017 1588092 - 76 113968346 Shewmr4_R0059 - 13 Val tRNA
1588125 1588200 - 76 113968346 Shewmr4_R0060 - 13 Val tRNA
1588249 1588324 - 76 113968346 Shewmr4_R0061 - 13 Val tRNA
1590422 1590497 + 76 113968346 Shewmr4_R0062 - 02 Ala tRNA
1590565 1590640 + 76 113968346 Shewmr4_R0063 - 04 Glu tRNA
1590748 1590823 + 76 113968346 Shewmr4_R0064 - 02 Ala tRNA
1590888 1590963 + 76 113968346 Shewmr4_R0065 - 04 Glu tRNA
1591144 1591219 + 76 113968346 Shewmr4_R0066 - 04 Glu tRNA
1591317 1591392 + 76 113968346 Shewmr4_R0067 - 04 Glu tRNA
1591573 1591648 + 76 113968346 Shewmr4_R0068 - 04 Glu tRNA
1591829 1591904 + 76 113968346 Shewmr4_R0069 - 04 Glu tRNA
1592085 1592160 + 76 113968346 Shewmr4_R0070 - 04 Glu tRNA
1791058 1792592 + 1535 113968346 Shewmr4_R0071 - 16S ribosomal RNA
1792693 1792769 + 77 113968346 Shewmr4_R0072 - 14 Ile tRNA
1792908 1792983 + 76 113968346 Shewmr4_R0073 - 02 Ala tRNA
1793259 1796151 + 2893 113968346 Shewmr4_R0074 - 23S ribosomal RNA
1796373 1796488 + 116 113968346 Shewmr4_R0075 - 5S ribosomal RNA
1815933 1816009 - 77 113968346 Shewmr4_R0076 - 16 Met tRNA
1816057 1816133 - 77 113968346 Shewmr4_R0077 - 16 Met tRNA
1816223 1816299 - 77 113968346 Shewmr4_R0078 - 16 Met tRNA
1816338 1816414 - 77 113968346 Shewmr4_R0079 - 16 Met tRNA
1825840 1825930 + 91 113968346 Shewmr4_R0080 - 08 Ser tRNA
1826727 1826817 + 91 113968346 Shewmr4_R0081 - 08 Ser tRNA
1830560 1830635 + 76 113968346 Shewmr4_R0082 - 01 Gly tRNA
1830657 1830730 + 74 113968346 Shewmr4_R0083 - 19 Cys tRNA
1830779 1830865 + 87 113968346 Shewmr4_R0084 - 15 Leu tRNA
1830996 1831082 + 87 113968346 Shewmr4_R0085 - 15 Leu tRNA
1999543 1999630 + 88 113968346 Shewmr4_R0086 - 08 Ser tRNA
2239340 2239438 + 99 113968346 Shewmr4_R0087 -
2328222 2328298 - 77 113968346 Shewmr4_R0089 - 13 Val tRNA
2328337 2328413 - 77 113968346 Shewmr4_R0090 - 13 Val tRNA
2350019 2350109 + 91 113968346 Shewmr4_R0091 - 08 Ser tRNA
2406007 2406093 - 87 113968346 Shewmr4_R0092 - 15 Leu tRNA
2406143 2406216 - 74 113968346 Shewmr4_R0093 - 19 Cys tRNA
2406240 2406315 - 76 113968346 Shewmr4_R0094 - 01 Gly tRNA
2448931 2449015 + 85 113968346 Shewmr4_R0095 - 18 Tyr tRNA
2449055 2449139 + 85 113968346 Shewmr4_R0096 - 18 Tyr tRNA
2449256 2449340 + 85 113968346 Shewmr4_R0097 - 18 Tyr tRNA
2455379 2455454 + 76 113968346 Shewmr4_R0098 - 07 Asn tRNA
2455501 2455576 + 76 113968346 Shewmr4_R0099 - 07 Asn tRNA
2455607 2455682 + 76 113968346 Shewmr4_R0100 - 07 Asn tRNA
2455728 2455803 + 76 113968346 Shewmr4_R0101 - 07 Asn tRNA
2455850 2455925 + 76 113968346 Shewmr4_R0102 - 07 Asn tRNA
2583734 2583810 - 77 113968346 Shewmr4_R0103 - 06 Asp tRNA
2583868 2583944 - 77 113968346 Shewmr4_R0104 - 06 Asp tRNA
2681894 2681970 - 77 113968346 Shewmr4_R0105 - 03 Pro tRNA
2758388 2758498 - 111 113968346 Shewmr4_R0106 -
2822195 2822270 - 76 113968346 Shewmr4_R0107 - 10 Lys tRNA
2822432 2822507 - 76 113968346 Shewmr4_R0108 - 10 Lys tRNA
2822543 2822618 - 76 113968346 Shewmr4_R0109 - 10 Lys tRNA
2822782 2822857 - 76 113968346 Shewmr4_R0110 - 10 Lys tRNA
2822895 2822970 - 76 113968346 Shewmr4_R0111 - 10 Lys tRNA
2823006 2823081 - 76 113968346 Shewmr4_R0112 - 10 Lys tRNA
2823136 2823211 - 76 113968346 Shewmr4_R0113 - 10 Lys tRNA
2943926 2944043 - 118 113968346 Shewmr4_R0114 - SRP RNA; RNA component of signal recognition particle
2967638 2967713 - 76 113968346 Shewmr4_R0115 - 09 His tRNA
2967723 2967799 - 77 113968346 Shewmr4_R0116 - 11 Arg tRNA
2967915 2967991 - 77 113968346 Shewmr4_R0117 - 03 Pro tRNA
3146520 3146671 - 152 113968346 Shewmr4_R0118 -
3323222 3323576 + 355 113968346 Shewmr4_R0119 - tmRNA
3471665 3471741 + 77 113968346 Shewmr4_R0120 - 16 Met tRNA
3569887 3570002 - 116 113968346 Shewmr4_R0121 - 5S ribosomal RNA
3570224 3573116 - 2893 113968346 Shewmr4_R0122 - 23S ribosomal RNA
3573475 3575009 - 1535 113968346 Shewmr4_R0123 - 16S ribosomal RNA
3582813 3582888 + 76 113968346 Shewmr4_R0124 - 17 Phe tRNA
3582944 3583030 + 87 113968346 Shewmr4_R0125 - 15 Leu tRNA
3583074 3583160 + 87 113968346 Shewmr4_R0126 - 15 Leu tRNA
3621834 3621966 + 133 113968346 Shewmr4_R0127 -
3850188 3850274 - 87 113968346 Shewmr4_R0128 - 15 Leu tRNA
3944128 3944359 - 232 113968346 Shewmr4_R0129 -
4250262 4250377 - 116 113968346 Shewmr4_R0130 - 5S ribosomal RNA
4250508 4253400 - 2893 113968346 Shewmr4_R0131 - 23S ribosomal RNA
4253712 4255246 - 1535 113968346 Shewmr4_R0132 - 16S ribosomal RNA
4256466 4256541 - 76 113968346 Shewmr4_R0133 - 12 Thr tRNA
4256575 4256690 - 116 113968346 Shewmr4_R0134 - 5S ribosomal RNA
4256912 4259804 - 2893 113968346 Shewmr4_R0135 - 23S ribosomal RNA
4260116 4261650 - 1535 113968346 Shewmr4_R0136 - 16S ribosomal RNA
4400137 4400436 - 300 113968346 Shewmr4_R0137 - RNA component of RNaseP
4432961 4433076 - 116 113968346 Shewmr4_R0138 - 5S ribosomal RNA
4433298 4436190 - 2893 113968346 Shewmr4_R0139 - 23S ribosomal RNA
4436502 4438036 - 1535 113968346 Shewmr4_R0140 - 16S ribosomal RNA
4672013 4672128 - 116 113968346 Shewmr4_R0141 - 5S ribosomal RNA
4672350 4675242 - 2893 113968346 Shewmr4_R0142 - 23S ribosomal RNA
4675601 4677135 - 1535 113968346 Shewmr4_R0143 - 16S ribosomal RNA