Материалы:NC 009436

Вы находитесь в Инкубаторе

Это исходный материал (как правило загружен ботом)

Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009436            4518712 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Enterobacter sp. 638, complete genome.
   ACCESSION   NC_009436
   VERSION     NC_009436.1  GI:146309667
   KEYWORDS    .
   SOURCE      Enterobacter sp. 638
     ORGANISM  Enterobacter sp. 638
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Enterobacter.
   REFERENCE   1  (bases 1 to 4518712)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Taghavi,S., Newman,L.,
               Vangronsveld,J., van der Lelie,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Enterobacter sp. 638
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4518712)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (08-MAY-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4518712)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Taghavi,S., Newman,L.,
               Vangronsveld,J., van der Lelie,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (06-APR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000653.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4002721
               Source DNA and bacteria available from Daniel van der Lelie
               (vdlelied@bnl.gov)
               Contacts: Daniel van der Lelie (vdlelied@bnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
85915	86005	-	91	146309667	Ent638_R0001	-	Sec tRNA
205148	205224	+	77	146309667	Ent638_R0002	-	^{03 Pro tRNA}
220280	220355	+	76	146309667	Ent638_R0003	-	^{12 Thr tRNA}
220364	220448	+	85	146309667	Ent638_R0004	-	^{18 Tyr tRNA}
220564	220638	+	75	146309667	Ent638_R0005	-	^{01 Gly tRNA}
220645	220720	+	76	146309667	Ent638_R0006	-	^{12 Thr tRNA}
250882	252426	+	1545	146309667	Ent638_R0007	-	16S ribosomal RNA
252506	252581	+	76	146309667	Ent638_R0008	-	^{04 Glu tRNA}
252813	255725	+	2913	146309667	Ent638_R0009	-	23S ribosomal RNA
255816	255942	+	127	146309667	Ent638_R0010	-	5S ribosomal RNA
371299	371374	-	76	146309667	Ent638_R0011	-	^{17 Phe tRNA}
399597	399672	+	76	146309667	Ent638_R0012	-	^{01 Gly tRNA}
399769	399844	+	76	146309667	Ent638_R0013	-	^{01 Gly tRNA}
399941	400016	+	76	146309667	Ent638_R0014	-	^{01 Gly tRNA}
523489	523573	+	85	146309667	Ent638_R0015	-	^{15 Leu tRNA}
596702	596788	-	87	146309667	Ent638_R0016	-	^{15 Leu tRNA}
596820	596906	-	87	146309667	Ent638_R0017	-	^{15 Leu tRNA}
596935	597021	-	87	146309667	Ent638_R0018	-	^{15 Leu tRNA}
838233	839777	+	1545	146309667	Ent638_R0019	-	16S ribosomal RNA
839845	839921	+	77	146309667	Ent638_R0020	-	^{14 Ile tRNA}
840030	840105	+	76	146309667	Ent638_R0021	-	^{02 Ala tRNA}
840314	843225	+	2912	146309667	Ent638_R0022	-	23S ribosomal RNA
843316	843439	+	124	146309667	Ent638_R0023	-	5S ribosomal RNA
843490	843566	+	77	146309667	Ent638_R0024	-	^{06 Asp tRNA}
852194	852270	+	77	146309667	Ent638_R0025	-	^{06 Asp tRNA}
875530	875605	+	76	146309667	Ent638_R0026	-	^{12 Thr tRNA}
1026638	1026755	+	118	146309667	Ent638_R0027	-	SRP RNA; RNA component of signal recognition particle
1107772	1107848	+	77	146309667	Ent638_R0028	-	^{11 Arg tRNA}
1305246	1305320	-	75	146309667	Ent638_R0029	-	^{05 Gln tRNA}
1305358	1305432	-	75	146309667	Ent638_R0030	-	^{05 Gln tRNA}
1305478	1305554	-	77	146309667	Ent638_R0031	-	^{16 Met tRNA}
1305571	1305645	-	75	146309667	Ent638_R0032	-	^{05 Gln tRNA}
1305678	1305752	-	75	146309667	Ent638_R0033	-	^{05 Gln tRNA}
1305775	1305859	-	85	146309667	Ent638_R0034	-	^{15 Leu tRNA}
1305869	1305945	-	77	146309667	Ent638_R0035	-	^{16 Met tRNA}
1365991	1366066	+	76	146309667	Ent638_R0036	-	^{10 Lys tRNA}
1366189	1366264	+	76	146309667	Ent638_R0037	-	^{13 Val tRNA}
1366268	1366343	+	76	146309667	Ent638_R0038	-	^{10 Lys tRNA}
1366484	1366559	+	76	146309667	Ent638_R0039	-	^{10 Lys tRNA}
1366590	1366665	+	76	146309667	Ent638_R0040	-	^{10 Lys tRNA}
1638951	1639038	+	88	146309667	Ent638_R0041	-	^{08 Ser tRNA}
1639171	1639258	+	88	146309667	Ent638_R0042	-	^{08 Ser tRNA}
1706012	1706099	-	88	146309667	Ent638_R0043	-	^{08 Ser tRNA}
1706328	1706415	-	88	146309667	Ent638_R0044	-	^{08 Ser tRNA}
1938960	1939036	-	77	146309667	Ent638_R0045	-	^{13 Val tRNA}
1939041	1939117	-	77	146309667	Ent638_R0046	-	^{13 Val tRNA}
2490349	2490433	+	85	146309667	Ent638_R0047	-	^{18 Tyr tRNA}
2490642	2490726	+	85	146309667	Ent638_R0048	-	^{18 Tyr tRNA}
2696719	2696804	-	86	146309667	Ent638_R0049	-	^{15 Leu tRNA}
2696817	2696890	-	74	146309667	Ent638_R0050	-	^{19 Cys tRNA}
2696937	2697012	-	76	146309667	Ent638_R0051	-	^{01 Gly tRNA}
2759751	2759846	-	96	146309667	Ent638_R0052	-	Xaa tRNA
2760835	2760910	+	76	146309667	Ent638_R0053	-	^{07 Asn tRNA}
2763761	2763836	+	76	146309667	Ent638_R0054	-	^{07 Asn tRNA}
2778273	2778348	-	76	146309667	Ent638_R0055	-	^{07 Asn tRNA}
2780100	2780175	+	76	146309667	Ent638_R0056	-	^{07 Asn tRNA}
3009772	3009848	+	77	146309667	Ent638_R0057	-	^{03 Pro tRNA}
3125404	3125478	+	75	146309667	Ent638_R0058	-	^{11 Arg tRNA}
3180686	3180761	-	76	146309667	Ent638_R0059	-	^{02 Ala tRNA}
3180801	3180876	-	76	146309667	Ent638_R0060	-	^{02 Ala tRNA}
3183575	3183650	+	76	146309667	Ent638_R0061	-	^{13 Val tRNA}
3183695	3183770	+	76	146309667	Ent638_R0062	-	^{13 Val tRNA}
3183807	3183882	+	76	146309667	Ent638_R0063	-	^{13 Val tRNA}
3183886	3183961	+	76	146309667	Ent638_R0064	-	^{10 Lys tRNA}
3342737	3342863	-	127	146309667	Ent638_R0065	-	5S ribosomal RNA
3342953	3345864	-	2912	146309667	Ent638_R0066	-	23S ribosomal RNA
3346096	3346171	-	76	146309667	Ent638_R0067	-	^{04 Glu tRNA}
3346252	3347796	-	1545	146309667	Ent638_R0068	-	16S ribosomal RNA
3374760	3375119	+	360	146309667	Ent638_R0069	-	tmRNA
3453621	3453697	-	77	146309667	Ent638_R0070	-	^{11 Arg tRNA}
3453727	3453803	-	77	146309667	Ent638_R0071	-	^{11 Arg tRNA}
3453833	3453909	-	77	146309667	Ent638_R0072	-	^{11 Arg tRNA}
3454107	3454183	-	77	146309667	Ent638_R0073	-	^{11 Arg tRNA}
3454188	3454280	-	93	146309667	Ent638_R0074	-	^{08 Ser tRNA}
3552385	3552461	+	77	146309667	Ent638_R0075	-	^{16 Met tRNA}
3552521	3552597	+	77	146309667	Ent638_R0076	-	^{16 Met tRNA}
3552655	3552731	+	77	146309667	Ent638_R0077	-	^{16 Met tRNA}
3610093	3610166	-	74	146309667	Ent638_R0078	-	^{01 Gly tRNA}
3687340	3687415	+	76	146309667	Ent638_R0079	-	^{17 Phe tRNA}
3783413	3783488	+	76	146309667	Ent638_R0080	-	^{16 Met tRNA}
3913153	3913229	-	77	146309667	Ent638_R0081	-	^{16 Met tRNA}
3915107	3915193	-	87	146309667	Ent638_R0082	-	^{15 Leu tRNA}
4023722	4023853	-	132	146309667	Ent638_R0083	-	5S ribosomal RNA
4023887	4023962	-	76	146309667	Ent638_R0084	-	^{12 Thr tRNA}
4023973	4024096	-	124	146309667	Ent638_R0085	-	5S ribosomal RNA
4024186	4027097	-	2912	146309667	Ent638_R0086	-	23S ribosomal RNA
4027329	4027404	-	76	146309667	Ent638_R0087	-	^{04 Glu tRNA}
4027485	4029029	-	1545	146309667	Ent638_R0088	-	16S ribosomal RNA
4269384	4269510	-	127	146309667	Ent638_R0089	-	5S ribosomal RNA
4269600	4272511	-	2912	146309667	Ent638_R0090	-	23S ribosomal RNA
4272720	4272795	-	76	146309667	Ent638_R0091	-	^{02 Ala tRNA}
4272904	4272980	-	77	146309667	Ent638_R0092	-	^{14 Ile tRNA}
4273048	4274592	-	1545	146309667	Ent638_R0093	-	16S ribosomal RNA
4327269	4327345	-	77	146309667	Ent638_R0094	-	^{03 Pro tRNA}
4327389	4327475	-	87	146309667	Ent638_R0095	-	^{15 Leu tRNA}
4327495	4327570	-	76	146309667	Ent638_R0096	-	^{09 His tRNA}
4327637	4327713	-	77	146309667	Ent638_R0097	-	^{11 Arg tRNA}
4360201	4360276	-	76	146309667	Ent638_R0098	-	^{20 Trp tRNA}
4360331	4360407	-	77	146309667	Ent638_R0099	-	^{06 Asp tRNA}
4360459	4360582	-	124	146309667	Ent638_R0100	-	5S ribosomal RNA
4360672	4363584	-	2913	146309667	Ent638_R0101	-	23S ribosomal RNA
4363793	4363868	-	76	146309667	Ent638_R0102	-	^{02 Ala tRNA}
4363977	4364053	-	77	146309667	Ent638_R0103	-	^{14 Ile tRNA}
4364121	4365665	-	1545	146309667	Ent638_R0104	-	16S ribosomal RNA
4466199	4466325	-	127	146309667	Ent638_R0105	-	5S ribosomal RNA
4466415	4469326	-	2912	146309667	Ent638_R0106	-	23S ribosomal RNA
4469558	4469633	-	76	146309667	Ent638_R0107	-	^{04 Glu tRNA}
4469715	4471259	-	1545	146309667	Ent638_R0108	-	16S ribosomal RNA