Геном прокариот/Материалы:NC 009718

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009718            1948941 bp    DNA     circular BCT 05-SEP-2007
   DEFINITION  Fervidobacterium nodosum Rt17-B1, complete genome.
   ACCESSION   NC_009718
   VERSION     NC_009718.1  GI:154248705
   KEYWORDS    .
   SOURCE      Fervidobacterium nodosum Rt17-B1
     ORGANISM  Fervidobacterium nodosum Rt17-B1
               Bacteria; Thermotogae; Thermotogales; Thermotogaceae;
               Fervidobacterium.
   REFERENCE   1  (bases 1 to 1948941)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N., Nelson,K., Gogarten,J.P., Noll,K. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Fervidobacterium nodosum Rt17-B1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 1948941)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (31-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1948941)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N., Nelson,K., Gogarten,J.P., Noll,K. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (16-JUL-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000771.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4002340
               Source DNA and bacteria available from Kenneth Noll
               (kenneth.noll@uconn.edu)
               Contacts: Kenneth Noll (kenneth.noll@uconn.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
36410	36485	+	76	154248705	Fnod_R0001	-	^{07 Asn tRNA}
38615	38690	+	76	154248705	Fnod_R0002	-	^{07 Asn tRNA}
118612	118687	+	76	154248705	Fnod_R0003	-	^{01 Gly tRNA}
360021	360097	-	77	154248705	Fnod_R0004	-	^{11 Arg tRNA}
400417	400492	+	76	154248705	Fnod_R0005	-	^{16 Met tRNA}
400531	400606	+	76	154248705	Fnod_R0006	-	^{12 Thr tRNA}
400645	400720	+	76	154248705	Fnod_R0007	-	^{12 Thr tRNA}
464706	464783	-	78	154248705	Fnod_R0008	-	^{06 Asp tRNA}
568302	568377	+	76	154248705	Fnod_R0009	-	^{02 Ala tRNA}
723775	723849	+	75	154248705	Fnod_R0010	-	^{04 Glu tRNA}
723873	723947	+	75	154248705	Fnod_R0011	-	^{11 Arg tRNA}
723953	724028	+	76	154248705	Fnod_R0012	-	^{10 Lys tRNA}
737090	737165	-	76	154248705	Fnod_R0013	-	^{16 Met tRNA}
737173	737249	-	77	154248705	Fnod_R0014	-	^{19 Cys tRNA}
799989	800079	-	91	154248705	Fnod_R0015	-	^{08 Ser tRNA}
808486	808601	-	116	154248705	Fnod_R0016	-	5S ribosomal RNA
808629	810537	-	1909	154248705	Fnod_R0017	-
811605	812621	-	1017	154248705	Fnod_R0017	-
812659	812734	-	76	154248705	Fnod_R0018	-	^{02 Ala tRNA}
812740	812816	-	77	154248705	Fnod_R0019	-	^{14 Ile tRNA}
812858	814365	-	1508	154248705	Fnod_R0020	-	16S ribosomal RNA
863991	864078	+	88	154248705	Fnod_R0021	-	^{08 Ser tRNA}
901024	901098	+	75	154248705	Fnod_R0022	-	^{13 Val tRNA}
926644	926719	-	76	154248705	Fnod_R0023	-	^{20 Trp tRNA}
926951	927037	-	87	154248705	Fnod_R0024	-	^{18 Tyr tRNA}
927069	927144	-	76	154248705	Fnod_R0025	-	^{12 Thr tRNA}
935367	935442	+	76	154248705	Fnod_R0026	-	^{10 Lys tRNA}
935452	935541	+	90	154248705	Fnod_R0027	-	^{15 Leu tRNA}
935568	935642	+	75	154248705	Fnod_R0028	-	^{01 Gly tRNA}
935683	935770	+	88	154248705	Fnod_R0029	-	^{15 Leu tRNA}
935845	936205	+	361	154248705	Fnod_R0030	-	tmRNA
946700	946776	+	77	154248705	Fnod_R0031	-	^{12 Thr tRNA}
981235	981338	+	104	154248705	Fnod_R0032	-	SRP RNA; RNA component of signal recognition particle
981444	981715	-	272	154248705	Fnod_R0033	-	RNA component of RNaseP
1049789	1049878	+	90	154248705	Fnod_R0034	-	^{15 Leu tRNA}
1049920	1049996	+	77	154248705	Fnod_R0035	-	^{16 Met tRNA}
1132987	1133063	-	77	154248705	Fnod_R0036	-	^{11 Arg tRNA}
1133095	1133170	-	76	154248705	Fnod_R0037	-	^{09 His tRNA}
1133206	1133282	-	77	154248705	Fnod_R0038	-	^{11 Arg tRNA}
1133310	1133385	-	76	154248705	Fnod_R0039	-	^{01 Gly tRNA}
1133389	1133465	-	77	154248705	Fnod_R0040	-	^{03 Pro tRNA}
1136879	1136954	-	76	154248705	Fnod_R0041	-	^{17 Phe tRNA}
1137015	1137089	-	75	154248705	Fnod_R0042	-	^{13 Val tRNA}
1137124	1137199	-	76	154248705	Fnod_R0043	-	^{04 Glu tRNA}
1201212	1201288	-	77	154248705	Fnod_R0044	-	^{03 Pro tRNA}
1228972	1229046	-	75	154248705	Fnod_R0045	-	^{05 Gln tRNA}
1229097	1229171	-	75	154248705	Fnod_R0046	-	^{13 Val tRNA}
1231370	1231459	+	90	154248705	Fnod_R0047	-	^{08 Ser tRNA}
1280569	1280684	-	116	154248705	Fnod_R0048	-	5S ribosomal RNA
1280727	1283637	-	2911	154248705	Fnod_R0049	-	23S ribosomal RNA
1283675	1283750	-	76	154248705	Fnod_R0050	-	^{02 Ala tRNA}
1283756	1283832	-	77	154248705	Fnod_R0051	-	^{14 Ile tRNA}
1283874	1285381	-	1508	154248705	Fnod_R0052	-	16S ribosomal RNA
1577787	1577860	-	74	154248705	Fnod_R0053	-	^{05 Gln tRNA}
1677953	1678028	-	76	154248705	Fnod_R0054	-	^{02 Ala tRNA}
1685728	1685815	+	88	154248705	Fnod_R0055	-	^{15 Leu tRNA}
1730518	1730607	+	90	154248705	Fnod_R0056	-	^{08 Ser tRNA}
1730682	1730758	+	77	154248705	Fnod_R0057	-	^{11 Arg tRNA}
1887004	1887080	-	77	154248705	Fnod_R0058	-	^{03 Pro tRNA}
1929272	1929356	+	85	154248705	Fnod_R0059	-	^{15 Leu tRNA}