Геном прокариот/Материалы:NC 009720

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009720            5308934 bp    DNA     circular BCT 05-SEP-2007
   DEFINITION  Xanthobacter autotrophicus Py2, complete genome.
   ACCESSION   NC_009720
   VERSION     NC_009720.1  GI:154243958
   KEYWORDS    .
   SOURCE      Xanthobacter autotrophicus Py2
     ORGANISM  Xanthobacter autotrophicus Py2
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
               Xanthobacteraceae; Xanthobacter.
   REFERENCE   1  (bases 1 to 5308934)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D.,
               Brettin,T., Bruce,D., Detter,J.C., Han,C., Tapia,R., Brainard,J.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Ensigns,S.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Xanthobacter autotrophicus Py2
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5308934)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (31-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5308934)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D.,
               Brettin,T., Bruce,D., Detter,J.C., Han,C., Tapia,R., Brainard,J.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Ensigns,S.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (25-JUL-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000781.
               URL -- http://www.jgi.doe.gov
               JGI Project ID:  4000362
               Source DNA and bacteria available from Scott A. Ensigns
               (ensigns@cc.usu.edu)
               Contacts: Scott A. Ensigns (ensigns@cc.usu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК править

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
219524	219613	+	90	154243958	Xaut_R0001	-	^{08 Ser tRNA}
280011	280086	-	76	154243958	Xaut_R0002	-	^{04 Glu tRNA}
433413	433489	-	77	154243958	Xaut_R0003	-	^{16 Met tRNA}
587540	587616	+	77	154243958	Xaut_R0004	-	^{11 Arg tRNA}
736313	736404	-	92	154243958	Xaut_R0005	-	Sec tRNA
1013945	1015422	+	1478	154243958	Xaut_R0006	-	16S ribosomal RNA
1015608	1015684	+	77	154243958	Xaut_R0007	-	^{14 Ile tRNA}
1015777	1015852	+	76	154243958	Xaut_R0008	-	^{02 Ala tRNA}
1016239	1019068	+	2830	154243958	Xaut_R0009	-	23S ribosomal RNA
1019153	1019266	+	114	154243958	Xaut_R0010	-	5S ribosomal RNA
1272852	1272927	-	76	154243958	Xaut_R0011	-	^{02 Ala tRNA}
1283240	1283315	+	76	154243958	Xaut_R0012	-	^{02 Ala tRNA}
1283392	1283467	+	76	154243958	Xaut_R0013	-	^{02 Ala tRNA}
1530074	1530149	+	76	154243958	Xaut_R0014	-	^{10 Lys tRNA}
1821675	1821741	-	67	154243958	Xaut_R0015	-	^{08 Ser tRNA}
1936017	1936103	-	87	154243958	Xaut_R0016	-	^{15 Leu tRNA}
1989364	1989695	+	332	154243958	Xaut_R0017	-	RNA component of RNaseP
2150387	2151864	+	1478	154243958	Xaut_R0018	-	16S ribosomal RNA
2152050	2152126	+	77	154243958	Xaut_R0019	-	^{14 Ile tRNA}
2152219	2152294	+	76	154243958	Xaut_R0020	-	^{02 Ala tRNA}
2152681	2155510	+	2830	154243958	Xaut_R0021	-	23S ribosomal RNA
2155595	2155708	+	114	154243958	Xaut_R0022	-	5S ribosomal RNA
2430461	2430562	-	102	154243958	Xaut_R0023	-	SRP RNA; RNA component of signal recognition particle
2494497	2494573	+	77	154243958	Xaut_R0024	-	^{11 Arg tRNA}
2568867	2568941	+	75	154243958	Xaut_R0025	-	^{01 Gly tRNA}
2776973	2777047	-	75	154243958	Xaut_R0026	-	^{05 Gln tRNA}
2942657	2942746	+	90	154243958	Xaut_R0027	-	^{08 Ser tRNA}
3137146	3137220	-	75	154243958	Xaut_R0028	-	^{13 Val tRNA}
3180210	3180286	+	77	154243958	Xaut_R0029	-	^{11 Arg tRNA}
3265765	3265839	-	75	154243958	Xaut_R0030	-	^{12 Thr tRNA}
3566432	3566506	-	75	154243958	Xaut_R0031	-	^{13 Val tRNA}
3623908	3623981	+	74	154243958	Xaut_R0032	-	^{05 Gln tRNA}
3678595	3678681	+	87	154243958	Xaut_R0033	-	^{15 Leu tRNA}
3682382	3682457	-	76	154243958	Xaut_R0034	-	^{12 Thr tRNA}
3732374	3732448	-	75	154243958	Xaut_R0035	-	^{12 Thr tRNA}
3735976	3736060	+	85	154243958	Xaut_R0036	-	^{18 Tyr tRNA}
3736441	3736514	+	74	154243958	Xaut_R0037	-	^{01 Gly tRNA}
3739072	3739148	+	77	154243958	Xaut_R0038	-	^{20 Trp tRNA}
3833627	3833702	-	76	154243958	Xaut_R0039	-	^{16 Met tRNA}
3866355	3866429	-	75	154243958	Xaut_R0040	-	^{01 Gly tRNA}
4013682	4013766	+	85	154243958	Xaut_R0041	-	^{15 Leu tRNA}
4021550	4021625	+	76	154243958	Xaut_R0042	-	^{13 Val tRNA}
4021933	4022009	+	77	154243958	Xaut_R0043	-	^{06 Asp tRNA}
4044275	4044349	+	75	154243958	Xaut_R0044	-	^{20 Trp tRNA}
4151450	4151523	+	74	154243958	Xaut_R0045	-	^{08 Ser tRNA}
4206419	4206510	+	92	154243958	Xaut_R0046	-	^{08 Ser tRNA}
4500625	4500701	-	77	154243958	Xaut_R0047	-	^{09 His tRNA}
4520431	4520515	+	85	154243958	Xaut_R0048	-	^{15 Leu tRNA}
4585071	4585147	+	77	154243958	Xaut_R0049	-	^{03 Pro tRNA}
4619775	4619849	-	75	154243958	Xaut_R0050	-	^{04 Glu tRNA}
4626767	4626843	+	77	154243958	Xaut_R0051	-	^{03 Pro tRNA}
4627954	4628030	+	77	154243958	Xaut_R0052	-	^{11 Arg tRNA}
4690306	4690381	-	76	154243958	Xaut_R0053	-	^{07 Asn tRNA}
4692607	4692680	-	74	154243958	Xaut_R0054	-	^{19 Cys tRNA}
4795355	4795444	-	90	154243958	Xaut_R0055	-	^{08 Ser tRNA}
4841804	4841879	-	76	154243958	Xaut_R0056	-	^{10 Lys tRNA}
4865618	4865695	+	78	154243958	Xaut_R0057	-	^{03 Pro tRNA}
5053633	5053709	+	77	154243958	Xaut_R0058	-	^{16 Met tRNA}
5204921	5204996	-	76	154243958	Xaut_R0059	-	^{17 Phe tRNA}