Материалы:NC 009792

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009792            4720462 bp    DNA     circular BCT 14-SEP-2007
   DEFINITION  Citrobacter koseri ATCC BAA-895, complete genome.
   ACCESSION   NC_009792
   VERSION     NC_009792.1  GI:157144296
   KEYWORDS    .
   SOURCE      Citrobacter koseri ATCC BAA-895
     ORGANISM  Citrobacter koseri ATCC BAA-895
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Citrobacter.
   REFERENCE   1  (bases 1 to 4720462)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-SEP-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   2  (bases 1 to 4720462)
     AUTHORS   McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
               Clifton,W.S., Latreille,P., Courtney,L., Pepin,K., Bhonagiri,V.,
               Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
     CONSRTM   The Citrobacter koseri Genome Sequencing Project
     TITLE     Direct Submission
     JOURNAL   Submitted (29-AUG-2007) Genetics, Genome Sequencing Center, 4444
               Forest Park Parkway, St. Louis, MO 63108, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000822.
               Citrobacter (diversus) koseri--Citrobacter cells are isolated from
               water, sewage, soils, and food, as well as from the feces of man
               and other animals, where they may be normal inhabitants. They can
               be found in urine, sputum, and other clinical specimens. They can
               sometimes be opportunistic pathogens particularly in
               immunocompromised patients in hospitals or in infants (Pepperell et
               al., Antimicrob Agents Chemother. 2002 Nov;46(11):3555-60. and
               references therein).
               
               The strain of Citrobacter koseri being sequenced, strain CDC
               4225-83, was isolated in 1983 in Maryland, where it caused neonatal
               meningitis. It was provided by Caroline Mohr and Melissa Campbell
               of CDC. The strain is available from the American Type Culture
               Collection as ATCC BAA-895 or from the Salmonella Genetic Stock
               Centre as SGSC4696. The genome was sequenced to 8X coverage, using
               plasmid and fosmid libraries and was finished to an error rate of
               less than 1 per 10,000 bases. Automated annotation was performed
               and manual annotation will continue in the labs of Michael
               McClelland and Kenneth Sanderson. The National Institute of Allergy
               and Infectious Diseases (NIAID), National Institutes of Health
               (NIH) has funded this project.
               
               Coding sequences below are predicted using GeneMark v3.3 and
               Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and
               Glimmer2 were blasted against NCBI's non-redundant (NR) database
               and predictions generated based on protein alignments. RNA genes
               were determined usingtRNAscan-SE 1.23 or Rfam v8.0. This sequence
               was finished as follows unless otherwise noted: all regions were
               double stranded, sequenced with an alternate chemistries or covered
               by high quality data (i.e., phred quality >=30); an attempt was
               made to resolve all sequencing problems, such as compressions and
               repeats; all regions were covered by sequence from more than one
               m13 subclone.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
93820	94351	+	532	157144296	CKO_00097	-	small subunit ribosomal RNA
95422	95494	+	73	157144296	CKO_00098	-	^{04 Glu tRNA}
98685	98800	+	116	157144296	CKO_00100	-	5S ribosomal RNA
98854	98927	+	74	157144296	CKO_00101	-	^{06 Asp tRNA}
98939	99011	+	73	157144296	CKO_00102	-	^{20 Trp tRNA}
135992	136065	+	74	157144296	CKO_00138	-	^{11 Arg tRNA}
136123	136195	+	73	157144296	CKO_00139	-	^{09 His tRNA}
136218	136301	+	84	157144296	CKO_00140	-	^{15 Leu tRNA}
136348	136421	+	74	157144296	CKO_00141	-	^{03 Pro tRNA}
136745	136918	+	174	157144296	CKO_00143	-	SraJ RNA
183783	184314	+	532	157144296	CKO_00194	-	small subunit ribosomal RNA
185385	185457	+	73	157144296	CKO_00195	-	^{04 Glu tRNA}
185648	188554	+	2907	157144296	CKO_05140	-	23S ribosomal RNA
188754	188869	+	116	157144296	CKO_00196	-	5S ribosomal RNA
209092	209255	+	164	157144296	CKO_00215	-	rncO
222308	222456	-	149	157144296	CKO_00230	-	tke1 RNA
263515	263605	+	91	157144296	CKO_00271	-	SroE RNA
374321	374393	-	73	157144296	CKO_00392	-	^{10 Lys tRNA}
374401	374473	-	73	157144296	CKO_00393	-	^{13 Val tRNA}
374523	374595	-	73	157144296	CKO_00394	-	^{13 Val tRNA}
374643	374715	-	73	157144296	CKO_00395	-	^{13 Val tRNA}
377442	377514	+	73	157144296	CKO_00399	-	^{02 Ala tRNA}
377557	377629	+	73	157144296	CKO_00400	-	^{02 Ala tRNA}
426990	427061	-	72	157144296	CKO_00442	-	^{11 Arg tRNA}
542543	542636	-	94	157144296	CKO_00555	-	MicF RNA
566488	566561	-	74	157144296	CKO_00585	-	^{03 Pro tRNA}
674317	674401	-	85	157144296	CKO_00700	-	RyeE RNA
687309	687454	-	146	157144296	CKO_00708	-	QUAD RNA
800575	800647	-	73	157144296	CKO_00836	-	^{07 Asn tRNA}
802386	802458	+	73	157144296	CKO_00838	-	^{07 Asn tRNA}
953774	953846	-	73	157144296	CKO_00954	-	^{07 Asn tRNA}
956184	956256	-	73	157144296	CKO_00957	-	^{07 Asn tRNA}
957248	957334	+	87	157144296	CKO_00959	-	^{08 Ser tRNA}
984590	984673	+	84	157144296	CKO_00989	-	DsrA RNA
1023182	1023254	+	73	157144296	CKO_01035	-	^{01 Gly tRNA}
1023310	1023380	+	71	157144296	CKO_01036	-	^{19 Cys tRNA}
1023396	1023479	+	84	157144296	CKO_01037	-	^{15 Leu tRNA}
1098835	1099086	-	252	157144296	CKO_01129	-	SraC/RyeA RNA
1098949	1099048	+	100	157144296	CKO_01128	-	RyeB RNA
1138324	1138409	+	86	157144296	CKO_01176	-	SroD RNA
1277805	1277975	-	171	157144296	CKO_01307	-	RtT RNA
1277986	1278067	-	82	157144296	CKO_01308	-	^{18 Tyr tRNA}
1278107	1278188	-	82	157144296	CKO_01309	-	^{18 Tyr tRNA}
1336961	1337033	+	73	157144296	CKO_01376	-	^{12 Thr tRNA}
1369954	1370028	+	75	157144296	CKO_01416	-	C0343 RNA
1374933	1375056	+	124	157144296	CKO_01424	-	MicC RNA
1404801	1404864	-	64	157144296	CKO_01453	-	RydC RNA
1612447	1612520	+	74	157144296	CKO_01680	-	^{13 Val tRNA}
1612528	1612601	+	74	157144296	CKO_01681	-	^{13 Val tRNA}
1650169	1650276	+	108	157144296	CKO_01724	-	RprA RNA
1727130	1727213	+	84	157144296	CKO_01819	-	RyhB RNA
1737545	1737628	+	84	157144296	CKO_01831	-	RyhB RNA
1839505	1839672	-	168	157144296	CKO_01971	-	SraB RNA
1889176	1889260	+	85	157144296	CKO_02038	-	^{08 Ser tRNA}
1937270	1937354	-	85	157144296	CKO_02094	-	^{08 Ser tRNA}
2036117	2036201	+	85	157144296	CKO_02195	-	^{08 Ser tRNA}
2095842	2095920	+	79	157144296	CKO_02261	-	RybB RNA
2217689	2217761	-	73	157144296	CKO_02392	-	^{10 Lys tRNA}
2217897	2217969	-	73	157144296	CKO_02393	-	^{10 Lys tRNA}
2218118	2218190	-	73	157144296	CKO_02394	-	^{10 Lys tRNA}
2218197	2218269	-	73	157144296	CKO_02395	-	^{13 Val tRNA}
2218309	2218381	-	73	157144296	CKO_02396	-	^{10 Lys tRNA}
2307417	2307490	+	74	157144296	CKO_02492	-	^{16 Met tRNA}
2307502	2307583	+	82	157144296	CKO_02493	-	^{15 Leu tRNA}
2307610	2307681	+	72	157144296	CKO_02494	-	^{05 Gln tRNA}
2307721	2307792	+	72	157144296	CKO_02495	-	^{05 Gln tRNA}
2307812	2307885	+	74	157144296	CKO_02497	-	^{16 Met tRNA}
2307895	2307966	+	72	157144296	CKO_02498	-	^{05 Gln tRNA}
2308012	2308083	+	72	157144296	CKO_02499	-	^{05 Gln tRNA}
2316478	2316640	+	163	157144296	CKO_02508	-	SroC RNA
2423929	2424002	-	74	157144296	CKO_02617	-	^{11 Arg tRNA}
2470084	2470164	-	81	157144296	CKO_02667	-	SroB RNA
2504936	2505033	-	98	157144296	CKO_02703	-	bacterial signal recognition particle RNA
2733973	2734045	-	73	157144296	CKO_02951	-	^{12 Thr tRNA}
2749265	2749338	-	74	157144296	CKO_02967	-	^{06 Asp tRNA}
2757586	2757659	-	74	157144296	CKO_02977	-	^{06 Asp tRNA}
2757713	2757828	-	116	157144296	CKO_02978	-	5S ribosomal RNA
2761018	2761090	-	73	157144296	CKO_02980	-	^{04 Glu tRNA}
2762161	2762692	-	532	157144296	CKO_02981	-	small subunit ribosomal RNA
2791690	2791762	-	73	157144296	CKO_03012	-	^{12 Thr tRNA}
2791771	2791842	-	72	157144296	CKO_03013	-	^{01 Gly tRNA}
2791963	2792044	-	82	157144296	CKO_03014	-	^{18 Tyr tRNA}
2792056	2792128	-	73	157144296	CKO_03015	-	^{12 Thr tRNA}
2795660	2795775	-	116	157144296	CKO_03020	-	5S ribosomal RNA
2799061	2799133	-	73	157144296	CKO_03021	-	^{02 Ala tRNA}
2799250	2799323	-	74	157144296	CKO_03022	-	^{14 Ile tRNA}
2800379	2800910	-	532	157144296	CKO_03023	-	small subunit ribosomal RNA
2809327	2809437	+	111	157144296	CKO_03033	-	OxyS RNA
2917339	2917592	-	254	157144296	CKO_03148	-	CsrC RNA family
2918742	2918860	-	119	157144296	CKO_03150	-	Spot 42 RNA
2926347	2926462	-	116	157144296	CKO_03160	-	5S ribosomal RNA
2929640	2929712	-	73	157144296	CKO_03162	-	^{02 Ala tRNA}
2929829	2929902	-	74	157144296	CKO_03163	-	^{14 Ile tRNA}
2930958	2931489	-	532	157144296	CKO_03164	-	small subunit ribosomal RNA
2964474	2964612	-	139	157144296	CKO_03200	-	t44 RNA
3076986	3077058	-	73	157144296	CKO_03310	-	SgrS RNA
3192511	3192594	+	84	157144296	CKO_03424	-	^{15 Leu tRNA}
3192625	3192708	+	84	157144296	CKO_03425	-	^{15 Leu tRNA}
3192744	3192827	+	84	157144296	CKO_03426	-	^{15 Leu tRNA}
3291775	3291856	-	82	157144296	CKO_03533	-	^{15 Leu tRNA}
3411306	3411378	-	73	157144296	CKO_03670	-	^{01 Gly tRNA}
3411450	3411522	-	73	157144296	CKO_03671	-	^{01 Gly tRNA}
3440370	3440442	+	73	157144296	CKO_03702	-	^{17 Phe tRNA}
3641465	3641580	-	116	157144296	CKO_03910	-	5S ribosomal RNA
3644877	3644949	-	73	157144296	CKO_03912	-	^{04 Glu tRNA}
3646020	3646551	-	532	157144296	CKO_03913	-	small subunit ribosomal RNA
3672983	3673344	+	362	157144296	CKO_03943	-	tmRNA
3757395	3757469	+	75	157144296	CKO_04037	-	SraD RNA
3760367	3760440	-	74	157144296	CKO_04042	-	^{11 Arg tRNA}
3760637	3760710	-	74	157144296	CKO_04043	-	^{11 Arg tRNA}
3760907	3760980	-	74	157144296	CKO_04044	-	^{11 Arg tRNA}
3761046	3761119	-	74	157144296	CKO_04045	-	^{11 Arg tRNA}
3761126	3761215	-	90	157144296	CKO_04046	-	^{08 Ser tRNA}
3858998	3859356	-	359	157144296	CKO_04148	-	CsrB/RsmB RNA family
3877663	3877809	+	147	157144296	CKO_04172	-	GcvB RNA
3882291	3882364	+	74	157144296	CKO_04179	-	^{16 Met tRNA}
3882519	3882592	+	74	157144296	CKO_04180	-	^{16 Met tRNA}
3882747	3882820	+	74	157144296	CKO_04181	-	^{16 Met tRNA}
3911803	3911889	-	87	157144296	CKO_04209	-	SraE/RygA/RygB family RNA
3912005	3912088	-	84	157144296	CKO_04210	-	SraE/RygA/RygB family RNA
3940652	3940722	-	71	157144296	CKO_04248	-	^{01 Gly tRNA}
3964871	3965054	+	184	157144296	CKO_04276	-	6S / SsrS RNA
4023512	4023584	+	73	157144296	CKO_04343	-	^{17 Phe tRNA}
4133781	4133853	+	73	157144296	CKO_04468	-	^{16 Met tRNA}
4181245	4181547	-	303	157144296	CKO_04520	-	RNA component of RNase P
4216423	4216593	+	171	157144296	CKO_04563	-	SraG RNA
4223487	4223560	-	74	157144296	CKO_04572	-	^{16 Met tRNA}
4225459	4225542	-	84	157144296	CKO_04575	-	^{15 Leu tRNA}
4253942	4254049	+	108	157144296	CKO_04613	-	SraH RNA
4321864	4321979	-	116	157144296	CKO_04685	-	5S ribosomal RNA
4322023	4322095	-	73	157144296	CKO_04686	-	^{12 Thr tRNA}
4322110	4322225	-	116	157144296	CKO_04687	-	5S ribosomal RNA
4325415	4325487	-	73	157144296	CKO_04689	-	^{04 Glu tRNA}
4326558	4327089	-	532	157144296	CKO_04690	-	small subunit ribosomal RNA
4466850	4466932	-	83	157144296	CKO_04860	-	RyhB RNA
4587553	4587626	-	74	157144296	CKO_04995	-	^{03 Pro tRNA}